CV887225

Overview
NameCV887225
Unique NameCV887225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887225 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.922e-39
Identity = 92/259 (35.52%), Postives = 142/259 (54.83%), Query Frame = 1
Query:    4 ISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNLFGENV---------VDLFTYQRMGAYFFSPEHF 753
            I +GLGP GELRYPS+ + ++    PG+GEFQC D+ +    ++ A   G+P W L  P DA  Y++ P    FFK +G ++ S  G FF++WYS++LI HG+ +L  A+  F    V++  K+  IH  Y   SH +ELTAG YN  KRDGY  +A M +K+   +    +++ D     E+ S+P+ L+ ++ +   K G+EV+G+N+  T    G+ Q+  N     V         +  FTY R+    F   +F
Sbjct:  180 IEVGLGPAGELRYPSYPQ-SQGWVFPGIGEFQCYDKYLKKDFKEAAAKAGHPEWDL--PEDAGEYNDKPEETGFFKKDG-TYVSEKGKFFMTWYSNKLIFHGDQILGEANKIFAGLKVNLAAKVSGIHWLYNHHSHAAELTAGYYNLFKRDGYRPIARMLSKHYGILNFTCLEMKDTDNTAEALSAPQELVQEVLSKAWKEGIEVAGENALETYGAKGYNQILLNARPNGVNPNGKPKLRMYGFTYLRLSDTVFQENNF 434          
BLAST of CV887225 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 154.451 bits (389), Expect = 6.017e-37
Identity = 83/226 (36.73%), Postives = 133/226 (58.85%), Query Frame = 1
Query:    4 ISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKNL 681
            I +G G  GELRYPS+    +    PG+GEFQC D+ M+   ++  +  GN  W + G   A +Y+++P+   FF+ NG ++++  G FFL+WYS++LI HG+ +L  A+  F    V+I  K+  IH WY   SH +ELTAG YN A RDGY  +A M A++   +    +++ D  QP E+ S+P+ L+ Q+ ++  K  ++V+G+N+        + QM  N+
Sbjct:  179 IEVGCGAAGELRYPSYPE-TQGWVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPGK-GAGTYNDTPDKTEFFRPNG-TYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVSGIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNV 401          
BLAST of CV887225 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.858e-37
Identity = 80/210 (38.10%), Postives = 128/210 (60.95%), Query Frame = 1
Query:    4 ISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNS 633
            I +GLGP GELRYPS+ +  +  + PG+GEFQC D+ +    +  A   G+  W L  P DA +Y++ P S  FFK NG ++ +  G FFL+WYS+QL++HG+ +L  A+  F    V +  K+  IH WYK  +H +ELTAG YN   RDGY  +A++ +++   +    +++ D  Q  ++ SSP+ L+ Q+ +   +  +EV+G+N+
Sbjct:  178 IEVGLGPAGELRYPSYPQ-NQGWQFPGIGEFQCYDKYLRESFKAAAAKAGHSEWEL--PDDAGTYNDVPESTEFFKTNG-TYLTEKGKFFLTWYSNQLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKAPNHAAELTAGYYNLDDRDGYRPIAKIVSRHHAILNFTCLEMRDSEQSSDAHSSPQKLVQQVLSGGWRENIEVAGENA 383          
BLAST of CV887225 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.026e-36
Identity = 83/210 (39.52%), Postives = 124/210 (59.05%), Query Frame = 1
Query:    4 ISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNS 633
            I +GLGP GE+RYPS+ + ++    PG+GEF C D+ +    +  A   G+P W L  P DA  Y+++P    FFKDNG ++ +  G FFLSWYS++LI HG+ +L  A+  F    V +  KI  IH WY+  +H +ELTAG YN   RDGY  +A M  ++   M     ++ D  Q  E+ S+PE L+ Q+ +A  + G+ V+ +N+
Sbjct:  175 IEVGLGPAGEMRYPSYPQ-SQGWVFPGIGEFICYDKYLEADFKAAAAKAGHPEWEL--PDDAGEYNDTPEKTQFFKDNG-TYLTEKGKFFLSWYSNKLIKHGDKILDEANKVFLGCRVQLAIKISGIHWWYRVPNHAAELTAGYYNLDDRDGYRTIARMLTRHHASMNFTCAEMRDSEQSEEAKSAPEELVQQVLSAGWREGLHVACENA 380          
BLAST of CV887225 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.340e-36
Identity = 80/210 (38.10%), Postives = 128/210 (60.95%), Query Frame = 1
Query:    4 ISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNS 633
            I +GLGP GELRYPS+ +  +    PG+GEFQC D+ +    +  A   G+  W L  P DA +Y++ P S  FFK NG ++ +  G FFL+WYS+QL++HG+ +L  A+  F    V++  K+  IH WYK ++H +ELTAG YN   RDGY  +A+M +++   +    +++ D  Q  ++ S P+ L+ Q+ +   +  +EV+G+N+
Sbjct:  178 IEVGLGPAGELRYPSYPQ-NQGWVFPGIGEFQCYDKYLKAEFKAAAARAGHSEWEL--PDDAGTYNDVPESTEFFKTNG-TYLTEKGKFFLTWYSNQLLNHGDEILDEANKAFLGCKVNLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHASLNFTCLEMRDSEQSSDAQSGPQELVQQVLSGGWRENIEVAGENA 383          
BLAST of CV887225 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.286e-36
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 1
Query:    4 ISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKN 678
            I +GLGP GE+RYPS+ + +     PG+GEF C D+ +    +  A A G+P W    P+DA  Y+++P    FF+DNG ++ +  G FFL+WYS+ LI HG+ +L  A+  F    V +  KI  IH WYK  SH +ELTAG YN   RDGY  +A M  ++   +     ++ D  Q  ++ S+PE L+ Q+ +A  + G+ V+ +N+     P  +  + +N
Sbjct:  175 IEVGLGPAGEMRYPSYPQ-SHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEF--PNDAGQYNDTPERTQFFRDNG-TYLTEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRN 395          
BLAST of CV887225 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 3.900e-36
Identity = 78/210 (37.14%), Postives = 125/210 (59.52%), Query Frame = 1
Query:    4 ISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNS 633
            I +GLGP GELRYPS+ + ++  + P +GEFQC D+ +    +      G+P W L  P DA  Y++ P S  FFK NG ++ +  G FFL+WYS++L++HG+ +L  A+  F    V +  K+  IH WYK  +H +ELTAG YN   RDGY  +A M +++   +    +++ D  QP ++ S P+ L+ Q+ +   +  + V+G+N+
Sbjct:  178 IEVGLGPAGELRYPSYPQ-SQGWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSNG-TYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENA 383          
BLAST of CV887225 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.652e-36
Identity = 80/210 (38.10%), Postives = 128/210 (60.95%), Query Frame = 1
Query:    4 ISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNS 633
            I +GLGP GELRYPS+ +  +    PG+GEFQC D+ +    +  A   G+  W L  P DA +Y++ P S  FFK NG ++ +  G FFL+WYS+QL++HG+ +L  A+  F    V +  K+  IH WYK ++H +ELTAG YN   RDGY  +A+M +++   +    +++ D  Q  ++ S+P+ L+ Q+ +   +  +EV+G+N+
Sbjct:  178 IEVGLGPAGELRYPSYPQ-NQGWVFPGIGEFQCYDKYLKADFKAAAAKAGHSEWEL--PDDAGTYNDIPESTEFFKTNG-TYLTEKGKFFLTWYSNQLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHGILNFTCLEMRDSEQSSDAQSAPQELVQQVLSGGWRENIEVAGENA 383          
BLAST of CV887225 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.652e-36
Identity = 83/225 (36.89%), Postives = 127/225 (56.44%), Query Frame = 1
Query:    4 ISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNSSVTGAPGGFEQMKKN 678
            I +GLGP GE+RYPS+ + +     PG+GEF C D+ +    +  A A G+P W    P+D   Y+++P    FF+DNG ++ S  G FFL+WYS+ LI HG+ +L  A+  F    V +  KI  IH WYK  SH +ELTAG YN   RDGY  +A M  ++   +     ++ D  Q  ++ S+PE L+ Q+ +A  + G+ V+ +N+     P  +  + +N
Sbjct:  175 IEVGLGPAGEMRYPSYPQ-SHGWSFPGIGEFICYDKYLQADFKAAAAAVGHPEWEF--PNDVGQYNDTPERTQFFRDNG-TYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDLEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRN 395          
BLAST of CV887225 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.482e-35
Identity = 80/210 (38.10%), Postives = 124/210 (59.05%), Query Frame = 1
Query:    4 ISMGLGPDGELRYPSHHRLAKSSKIPGVGEFQCCDRNMLNLLQQHAEANGNPLWGLRGPHDAPSYDESPNSNSFFKDNGGSWESPYGDFFLSWYSSQLISHGNCLLSLASSTFGETGVSIYGKIPLIHSWYKTRSHPSELTAGLYNTAKRDGYAAVAEMFAKNSCKMILPGMDLSDEHQPRESFSSPESLLAQIRTACNKHGVEVSGQNS 633
            I +GLGP GE+RYPS+ + ++    PGVGEF C D+ +    +  AE  G+P W L    DA +Y+++P    FF DNG ++++  G FFL+WYS++LI HG+ +L  A+  F    V +  K+  IH WY   +H +ELTAG YN   RDGY  +A M  ++   M     ++ D  Q  E+ S+PE L+ Q+ +A  + G+ ++ +N+
Sbjct:  175 IEVGLGPAGEMRYPSYPQ-SQGWVFPGVGEFICYDKYLQADFKAAAEEAGHPEWDLLD--DAGTYNDTPEKTQFFADNG-TYQTDKGKFFLTWYSNKLIKHGDKILDEANKVFLGCKVQLAIKVSGIHWWYNVPNHAAELTAGYYNLDDRDGYRTIAHMLTRHRASMNFTCAEMRDSEQSSEAKSAPEELVQQVLSAGWREGLNLACENA 380          
The following BLAST results are available for this feature:
BLAST of CV887225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AMYB_ARATH4.922e-3935.52Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]
AMYB_IPOBA6.017e-3736.73Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_MEDSA7.858e-3738.10Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_WHEAT1.026e-3639.52Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_VIGUN1.340e-3638.10Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_HORSP2.286e-3636.89Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_SOYBN3.900e-3637.14Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_TRIRP6.652e-3638.10Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_HORVU6.652e-3636.89Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_MAIZE1.482e-3538.10Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_030A07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T3_A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887225 ID=CV887225; Name=CV887225; organism=Citrus sinensis; type=EST; length=758bp
GGCATCTCGATGGGTCTAGGACCAGATGGTGAACTTCGGTATCCATCTCA
CCACCGACTAGCCAAAAGTAGCAAAATCCCTGGAGTTGGAGAATTCCAGT
GTTGTGACAGAAACATGCTTAACCTTCTTCAGCAACATGCCGAAGCAAAT
GGAAATCCTTTATGGGGACTTCGTGGTCCCCATGATGCCCCCAGTTATGA
TGAGTCACCTAACTCAAACAGTTTCTTTAAGGATAATGGTGGTTCCTGGG
AGTCTCCCTATGGTGACTTTTTCCTTTCCTGGTACTCAAGTCAGTTAATT
TCTCATGGAAATTGCCTTCTTTCCCTTGCCTCATCAACTTTTGGTGAAAC
TGGAGTGTCAATATATGGCAAAATCCCACTAATTCACTCATGGTACAAAA
CTCGATCTCATCCTTCTGAACTGACAGCTGGCCTCTATAACACAGCCAAG
AGAGATGGCTATGCTGCGGTTGCTGAAATGTTTGCAAAGAATTCTTGCAA
AATGATCTTGCCGGGAATGGACCTTTCAGATGAGCACCAGCCACGCGAGT
CCTTCTCAAGTCCCGAATCATTACTTGCCCAAATCAGAACAGCTTGCAAT
AAACATGGTGTCGAGGTTTCTGGGCAGAACTCATCAGTTACAGGAGCTCC
TGGCGGTTTTGAGCAAATGAAGAAAAATTTGTTTGGTGAGAATGTAGTGG
ACTTGTTCACTTATCAGAGAATGGGAGCATATTTCTTTTCACCTGAGCAT
TTCCCTTC
back to top