CV887224

Overview
NameCV887224
Unique NameCV887224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887224 vs. ExPASy Swiss-Prot
Match: VPS45_ARATH (Vacuolar protein sorting-associated protein 45 homolog OS=Arabidopsis thaliana GN=VPS45 PE=1 SV=2)

HSP 1 Score: 310.071 bits (793), Expect = 1.090e-83
Identity = 150/173 (86.71%), Postives = 167/173 (96.53%), Query Frame = -1
Query:  361 IDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLYGNRDFMNIARNMARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDLEEAQRTAK 879
            IDRLRLVMLYALRYEK++PVQLMQLFNKLASRS KYKPGLVQFLLKQAGV+KRTGDL+GNRD +NIARNMARGLKGVENVYTQHQPLLFQTMESI +GRLRDVDYPF+G+HFQQGRPQ+V+IF+VGGTTYEESRSVAL+NA NSG+RFILGG+ +LNSKRFLKDLEEAQR ++
Sbjct:  391 IDRLRLVMLYALRYEKENPVQLMQLFNKLASRSPKYKPGLVQFLLKQAGVEKRTGDLFGNRDLLNIARNMARGLKGVENVYTQHQPLLFQTMESITRGRLRDVDYPFVGDHFQQGRPQEVVIFMVGGTTYEESRSVALQNATNSGVRFILGGTAVLNSKRFLKDLEEAQRISR 563          
BLAST of CV887224 vs. ExPASy Swiss-Prot
Match: VPS45_MOUSE (Vacuolar protein sorting-associated protein 45 OS=Mus musculus GN=Vps45 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.764e-33
Identity = 76/166 (45.78%), Postives = 108/166 (65.06%), Query Frame = -1
Query:  385 DRLRLVMLYALRYEKDSPVQLMQLFNKLASRSA--KYKPGLVQFLLKQAGVDKRTGDLYGNRDFMNIARNMARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDL 876
            D +RLVMLYAL YE+ S   L  L   L S+    KY+  LV  +++  G   R  DL+  +D + I +   +GLKGVENVYTQHQP L +T++ +IKGRL++  YP+LG    + RPQD+I+FI+GG TYEE+ +V   N    G+R +LGG+ I N+K FL+++
Sbjct:  383 DAVRLVMLYALHYERHSSNSLPGLIVDLRSKGVAEKYRK-LVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPFLHETLDHLIKGRLKENLYPYLGPSTLRDRPQDIIVFIIGGATYEEALTVYNLNRTTPGVRIVLGGTTIHNTKSFLEEV 547          
BLAST of CV887224 vs. ExPASy Swiss-Prot
Match: VPS45_HUMAN (Vacuolar protein sorting-associated protein 45 OS=Homo sapiens GN=VPS45 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.930e-33
Identity = 74/166 (44.58%), Postives = 108/166 (65.06%), Query Frame = -1
Query:  385 DRLRLVMLYALRYEKDSPVQLMQLFNKLASR--SAKYKPGLVQFLLKQAGVDKRTGDLYGNRDFMNIARNMARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDL 876
            D  RLVMLYAL YE+ S   L  L   L ++  S KY+  LV  +++  G   R  DL+  +D + I +   +GLKGVENVYTQHQP L +T++ +IKGRL++  YP+LG    + RPQD+I+F++GG TYEE+ +V   N    G+R +LGG+ + N+K FL+++
Sbjct:  383 DAARLVMLYALHYERHSSNSLPGLMMDLRNKGVSEKYRK-LVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPFLHETLDHLIKGRLKENLYPYLGPSTLRDRPQDIIVFVIGGATYEEALTVYNLNRTTPGVRIVLGGTTVHNTKSFLEEV 547          
BLAST of CV887224 vs. ExPASy Swiss-Prot
Match: VPS45_RAT (Vacuolar protein sorting-associated protein 45 OS=Rattus norvegicus GN=Vps45 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.133e-33
Identity = 74/166 (44.58%), Postives = 108/166 (65.06%), Query Frame = -1
Query:  385 DRLRLVMLYALRYEKDSPVQLMQLFNKLASRSA--KYKPGLVQFLLKQAGVDKRTGDLYGNRDFMNIARNMARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDL 876
            D +RLVMLYAL YE+ S   L  L   L S+    KY+  LV  +++  G   R  DL+  +D + I +   +GLKGVENVYTQHQP L +T++ +IKG+L++  YP+LG    + RPQD+I+F++GG TYEE+ +V   N    G+R +LGG+ I N+K FL+++
Sbjct:  383 DAVRLVMLYALHYERHSSNSLPGLIVDLRSKGVAEKYRK-LVSAVVEYGGKRVRGSDLFSPKDAVAITKQFLKGLKGVENVYTQHQPFLHETLDHLIKGKLKENLYPYLGPSTLRDRPQDIIVFVIGGATYEEALTVYNLNRTTPGVRIVLGGTTIHNTKSFLEEV 547          
BLAST of CV887224 vs. ExPASy Swiss-Prot
Match: VPS45_DICDI (Vacuolar protein sorting-associated protein 45 OS=Dictyostelium discoideum GN=vps45 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.345e-32
Identity = 77/171 (45.03%), Postives = 113/171 (66.08%), Query Frame = -1
Query:  373 DRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKP-GLVQFLLKQAGVDKRTGDLYGNRDFMNIARNMA-RGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENANNSGI-RFILGGSVILNSKRFLKDLEEAQ 876
            D+L LV+LY++RYE     ++ +L  KL+S     K  GL+  L   AG   R GDL G ++  + AR++  RGL+GV N+YTQH+PLL   ++SI+K +L++  YP+L     + RPQDVIIF+VGG TYEE+ +V   N+ N+G+ R +LGG+ ILN ++FL+DL   Q
Sbjct:  385 DKLVLVLLYSIRYEDG---RVWELKEKLSSIGIPPKEIGLIDTLRGYAGASLREGDLLGTKNIFSFARSVVKRGLQGVSNIYTQHKPLLHDILDSILKNKLKETSYPYLSTTQSRERPQDVIIFMVGGITYEEALTVYTFNSLNTGVCRVVLGGTSILNREQFLEDLSSTQ 552          
BLAST of CV887224 vs. ExPASy Swiss-Prot
Match: YAB3_SCHPO (Putative vacuolar protein sorting-associated protein C2G11.03c OS=Schizosaccharomyces pombe GN=SPAC2G11.03c PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.089e-26
Identity = 65/168 (38.69%), Postives = 99/168 (58.93%), Query Frame = -1
Query:  385 RLRLVMLYALRYEKDSPVQLMQLFNKLASRSAK-YKPGLVQFLLKQAGVDKRTGDLYGNRDFMNIARNMARGLKGVENVYTQHQPLLFQTMESIIKGRLRDVDYPFLGNHFQ----QGRPQDVIIFIVGGTTYEESRSVALENANNSGIRFILGGSVILNSKRFLKDL 873
            +LRL  LY+LR+E+  P ++  L   L +      K  ++  LL  AG   R GD++   +  + AR+  +GL+GVENVY QH P L   +  +I+GRL++  +PFL +  +      +PQD+I+ IVGG TYEE+  V+  NA   G+R IL G+ ILNS  ++ D+
Sbjct:  383 KLRLAALYSLRFERIDPAKVSALQQMLIAGGVNPLKVSVIPTLLHVAGYSFRQGDVFPPSNLFSRARSGLKGLRGVENVYIQHNPFLKSILLDLIQGRLKETTHPFLNSETRAQTSNEKPQDIIVVIVGGATYEEAHFVSEFNATQPGVRIILAGTTILNSTAYIDDI 550          
BLAST of CV887224 vs. ExPASy Swiss-Prot
Match: VPS45_YEAST (Vacuolar protein sorting-associated protein 45 OS=Saccharomyces cerevisiae GN=VPS45 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 55/185 (29.73%), Postives = 90/185 (48.65%), Query Frame = -1
Query:  373 RLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDL-YGNRDFMNIARNMARGLKG--------VENVYTQHQPLLFQTMESIIKG-----RLRDVD---YPFLGNHFQQGRPQDVIIFIVGGTTYEESRSVALENAN-NSGIRFILGGSVILNSKRFLKDLEEAQ 873
            +L+L  +Y+L  +  S  ++ QL   L   S +  P  V F  K   +  R   +   N D  +I   +AR             ENVY QH P +   +  + K      R +++D   +  +GN   +  PQDVI+F++GG TYEE+R V   N   N+ +R +LGG+ IL++K ++  +  A+
Sbjct:  397 KLKLACIYSLNNQTSSD-KIRQLVEIL---SQQLPPEDVNFFHKFKSLFSRQDKMTQSNHDKDDILTELARRFNSRMNSKSNTAENVYMQHIPEISSLLTDLSKNALFRDRFKEIDTQGHRVIGNQQSKDIPQDVILFVIGGVTYEEARLVHDFNGTMNNRMRVVLGGTSILSTKEYMDSIRSAK 577          
The following BLAST results are available for this feature:
BLAST of CV887224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
VPS45_ARATH1.090e-8386.71Vacuolar protein sorting-associated protein 45 hom... [more]
VPS45_MOUSE1.764e-3345.78Vacuolar protein sorting-associated protein 45 OS=... [more]
VPS45_HUMAN3.930e-3344.58Vacuolar protein sorting-associated protein 45 OS=... [more]
VPS45_RAT5.133e-3344.58Vacuolar protein sorting-associated protein 45 OS=... [more]
VPS45_DICDI4.345e-3245.03Vacuolar protein sorting-associated protein 45 OS=... [more]
YAB3_SCHPO2.089e-2638.69Putative vacuolar protein sorting-associated prote... [more]
VPS45_YEAST4.228e-1129.73Vacuolar protein sorting-associated protein 45 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_030A06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_030_T7_A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887224 ID=CV887224; Name=CV887224; organism=Citrus sinensis; type=EST; length=879bp
TTTTGAATTACGGTTCTTTCTTTTACAGGGTGTACAAAAAATGGTACAGA
AGTAGGAGAGTGCCGGAGCGCAGAAAGGAAAGGATAAGAAATTACTCTTC
AATCTGAATTATCGGTTTTCACCTTTTCAGACTCAAATTAGTCTTCAATT
CGGTCCAAATTGCTGAATATTAAAGAGTGTGTCTATACGCTCCCAAAATG
TGCCCATTTACATGATCCCCTACTCAAGCTTCCGTCAAAAATTTACAAGA
AAAATTTTACCACTCACCGTATCAGAGACTTGAACCGTGGGTAATTATCT
ACATGGCTCTCAAATGCTACATATGTCAGGGTTTTAAATTCAAATAATAT
TGCTGCTGGATTTAGCTGTCCTCTGAGCTTCTTCCAGGTCTTTCAAAAAC
CTCTTTGAATTGAGAATTACTGAACCACCAAGTATAAAACGAATACCAGA
GTTATTGGCATTTTCTAGGGCGACGGAACGTGACTCCTCATATGTTGTCC
CACCAACAATGAAAATAATCACATCCTGTGGCCTGCCCTGCTGAAAGTGA
TTTCCAAGAAACGGGTAGTCCACATCCCGCAACCGTCCCTTGATTATGCT
CTCCATGGTTTGAAACAGAAGAGGCTGATGTTGCGTATAGACATTCTCAA
CCCCCTTCAAACCACGGGCCATGTTCCGAGCAATATTCATAAAATCTCGA
TTTCCATAAAGATCCCCGGTTCGCTTGTCTACACCTGCTTGCTTCAAGAG
GAACTGCACCAGCCCAGGCTTGTACTTCGCAGACCGAGAAGCTAGCTTGT
TGAAAAGCTGCATTAACTGAACTGGGCTATCCTTCTCATAGCGCAAAGCA
TACAACATAACCAGGCGCAGACGGTCAAT
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