EL492502

Overview
NameEL492502
Unique NameEL492502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length324
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2941 contig Csv1_Contig2941:99..421. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492502 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.502e-30
Identity = 66/92 (71.74%), Postives = 72/92 (78.26%), Query Frame = 1
Query:   55 TAXYYRAMXGRVAQEILRMSVLCA--VRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNE 324
            T  +Y      V + +     +C   VRMPISSDL+NPRNFITKI+RY KVVNIPNSMTILDELLPISIEMAKRNL GIWNFTNPGVVSHNE
Sbjct:  507 TGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNE 598          
BLAST of EL492502 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.268e-30
Identity = 65/92 (70.65%), Postives = 72/92 (78.26%), Query Frame = 1
Query:   55 TAXYYRAMXGRVAQEILRMSVLCA--VRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNE 324
            T  +Y      V + +     +C   VRMPISSDL+NPRNFITKI+RY KVVNIPNSMT+LDELLPISIEMAKRNL GIWNFTNPGVVSHNE
Sbjct:  512 TGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNE 603          
BLAST of EL492502 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.613e-29
Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 1
Query:   88 VAQEILR-MSVLCA--VRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNE 324
            + +E+LR    +C   VRMPISSDL+NPRNFITKI+RY KVV+IPNSMT+LDELLPISIEMAKRNL GIWNFTNPGVVSHNE
Sbjct:  520 MVEELLREFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNE 601          
BLAST of EL492502 vs. ExPASy Swiss-Prot
Match: YL780_MIMIV (Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L780 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.424e-17
Identity = 39/66 (59.09%), Postives = 54/66 (81.82%), Query Frame = 1
Query:  127 VRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNE 324
            +RMPI+ +  NPR+FITKI  Y ++ +IPNSMTILD+++P+ I+MA+   TG +NFTNPG+VSHNE
Sbjct:  159 IRMPITIE-QNPRSFITKILSYSRICSIPNSMTILDQMIPVMIDMARNKTTGTFNFTNPGLVSHNE 223          
The following BLAST results are available for this feature:
BLAST of EL492502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RHM3_ARATH2.502e-3071.74Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM1_ARATH4.268e-3070.65Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RHM2_ARATH3.613e-2978.05Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
YL780_MIMIV1.424e-1759.09Uncharacterized protein L780 OS=Acanthamoeba polyp... [more]
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Properties
Property NameValue
Genbank descriptionC1590 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC1590, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492502 ID=EL492502; Name=EL492502; organism=Citrus sinensis; type=EST; length=324bp
GTTCGGCTTGCAGGTNGGAGGGANNCTCCCGTAATGTTGNCCGGNTCCTT
TGCTACTGCCANGTACTACAGAGCCATGGNTGGAAGAGTNGCTCAAGAAA
TTTTGAGAATGTCTGTACTTTGCGCTGTCAGGATGCCGATCTCATCAGAT
TTATCCAATCCTCGCAACTTCATCACAAAGATCACTCGATATGAAAAGGT
AGTCAACATTCCAAACTCAATGACTATCTTGGATGAGCTTCTTCCAATTT
CCATTGAGATGGCAAAGAGAAACCTCACTGGAATTTGGAACTTTACGAAC
CCCGGTGTGGTGAGCCACAATGAG
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