EL492501

Overview
NameEL492501
Unique NameEL492501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length216
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2660 contig Csv1_Contig2660:279..494. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492501 vs. ExPASy Swiss-Prot
Match: RS211_ARATH (40S ribosomal protein S21-1 OS=Arabidopsis thaliana GN=RPS21B PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.812e-25
Identity = 50/62 (80.65%), Postives = 59/62 (95.16%), Query Frame = 1
Query:    4 NRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 189
            NR+ITSKDHA+VQ+NIGH+DA+G+YTGQF+TFALCGFVRAQGD DS +DRLWQKKKVE +QQ
Sbjct:   21 NRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQQ 82          
BLAST of EL492501 vs. ExPASy Swiss-Prot
Match: RS212_ARATH (40S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.091e-25
Identity = 50/62 (80.65%), Postives = 59/62 (95.16%), Query Frame = 1
Query:    4 NRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 189
            NRLITSKDHA+VQ+NIGH+DA+G+YTGQF+TFALCGFVRAQGD DS +DRLWQKKKVE +Q+
Sbjct:   21 NRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQK 82          
BLAST of EL492501 vs. ExPASy Swiss-Prot
Match: RS21_ORYSJ (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica GN=RPS21 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.099e-22
Identity = 46/62 (74.19%), Postives = 57/62 (91.94%), Query Frame = 1
Query:    4 NRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 189
            NR+IT+KDHA+VQINIGHVD +G+Y G+F+TFAL GF+RAQGD DSA+DRLWQK+K EV+QQ
Sbjct:   21 NRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDADSALDRLWQKRKAEVKQQ 82          
BLAST of EL492501 vs. ExPASy Swiss-Prot
Match: RS21_MAIZE (40S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.198e-22
Identity = 45/61 (73.77%), Postives = 56/61 (91.80%), Query Frame = 1
Query:    4 NRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQ 186
            NR+IT+KDHA+VQINIGH+DA+G+Y G F+TFAL GFVRAQGD DS++DRLWQKKK E++Q
Sbjct:   21 NRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRAQGDADSSLDRLWQKKKAEIKQ 81          
BLAST of EL492501 vs. ExPASy Swiss-Prot
Match: RS21_DICDI (40S ribosomal protein S21 OS=Dictyostelium discoideum GN=rps21 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.439e-14
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1
Query:    4 NRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKK 168
            NRLIT+KDHA+VQINIGHV+A+GIY G+ + FA CGF+R  G  D+A++RL Q+K
Sbjct:   18 NRLITAKDHASVQINIGHVNAEGIYNGEQTIFAFCGFLRNNGQSDAALNRLAQQK 72          
BLAST of EL492501 vs. ExPASy Swiss-Prot
Match: RS21_CYAPA (40S ribosomal protein S21 OS=Cyanophora paradoxa GN=RPS21 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.206e-14
Identity = 35/55 (63.64%), Postives = 47/55 (85.45%), Query Frame = 1
Query:    4 NRLITSKDHAAVQINIGHVDAD-GIYTGQFSTFALCGFVRAQGDGDSAIDRLWQK 165
            NRLI++ DHAAVQIN+GHVD + G+YTG ++TFALCGFVR+ G+ D+A++RL  K
Sbjct:   21 NRLISATDHAAVQINVGHVDPNSGLYTGDYTTFALCGFVRSMGESDAALNRLCVK 75          
BLAST of EL492501 vs. ExPASy Swiss-Prot
Match: RS21_ASPFU (40S ribosomal protein S21 OS=Aspergillus fumigatus GN=rps21 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.333e-11
Identity = 28/54 (51.85%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    4 NRLITSKDHAAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQK 165
            NR+I + DHA+VQI+I  VD +G YTG+  ++ALCGF+RA+G+ D +++RL Q+
Sbjct:   21 NRIIKANDHASVQISIAKVDENGRYTGENQSYALCGFIRARGESDDSLNRLCQR 74          
The following BLAST results are available for this feature:
BLAST of EL492501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RS211_ARATH1.812e-2580.6540S ribosomal protein S21-1 OS=Arabidopsis thalian... [more]
RS212_ARATH3.091e-2580.6540S ribosomal protein S21-2 OS=Arabidopsis thalian... [more]
RS21_ORYSJ1.099e-2274.1940S ribosomal protein S21 OS=Oryza sativa subsp. j... [more]
RS21_MAIZE3.198e-2273.7740S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=... [more]
RS21_DICDI1.439e-1463.6440S ribosomal protein S21 OS=Dictyostelium discoid... [more]
RS21_CYAPA3.206e-1463.6440S ribosomal protein S21 OS=Cyanophora paradoxa G... [more]
RS21_ASPFU4.333e-1151.8540S ribosomal protein S21 OS=Aspergillus fumigatus... [more]
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Properties
Property NameValue
Genbank descriptionC1580 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC1580, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492501 ID=EL492501; Name=EL492501; organism=Citrus sinensis; type=EST; length=216bp
CCNAACAGGCTCATCACCTCCAAGGATCACGCCGCTGTCCAGATCAACAT
CGGGCACGTTGATGCTGATGGCATTTACACTGGCCAATTCTCCACTTTCG
CTCTCTGCGGCTTCGTCCGNGCTCAGGGTGACGGTGACAGCGCCATTGAC
AGGCTTTGGCAAAAGAAGAAAGTTGAGGTCCGACAACAATAATTTTCCAT
TATTCCAGGACTCATC
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