CV887198

Overview
NameCV887198
Unique NameCV887198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV887198 vs. ExPASy Swiss-Prot
Match: WDR13_PONAB (WD repeat-containing protein 13 OS=Pongo abelii GN=WDR13 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.050e-23
Identity = 66/173 (38.15%), Postives = 101/173 (58.38%), Query Frame = -3 
Query:  262 DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSF-SLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 777
            D  G+LL+ GD +G ++S   +  +G L+++ R         PVT++  RS+ S  A  P LL       L  + V ++ +G L  + S  +    H +R+ FCPL+S  +G  +V GSED  V+F+D+ +   + VNKLQGH  PV+ V++N  E+LLASSD  G+VIVW+R
Sbjct:  313 DAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKR--LVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYRV-VDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRR 482
[Close]
BLAST of CV887198 vs. ExPASy Swiss-Prot
Match: WDR13_PANTR (WD repeat-containing protein 13 OS=Pan troglodytes GN=WDR13 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.050e-23
Identity = 66/173 (38.15%), Postives = 101/173 (58.38%), Query Frame = -3 
Query:  262 DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSF-SLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 777
            D  G+LL+ GD +G ++S   +  +G L+++ R         PVT++  RS+ S  A  P LL       L  + V ++ +G L  + S  +    H +R+ FCPL+S  +G  +V GSED  V+F+D+ +   + VNKLQGH  PV+ V++N  E+LLASSD  G+VIVW+R
Sbjct:  313 DAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKR--LVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYRV-VDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRR 482
[Close]
BLAST of CV887198 vs. ExPASy Swiss-Prot
Match: WDR13_MOUSE (WD repeat-containing protein 13 OS=Mus musculus GN=Wdr13 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.050e-23
Identity = 66/173 (38.15%), Postives = 101/173 (58.38%), Query Frame = -3 
Query:  262 DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSF-SLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 777
            D  G+LL+ GD +G ++S   +  +G L+++ R         PVT++  RS+ S  A  P LL       L  + V ++ +G L  + S  +    H +R+ FCPL+S  +G  +V GSED  V+F+D+ +   + VNKLQGH  PV+ V++N  E+LLASSD  G+VIVW+R
Sbjct:  313 DAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKR--LVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYRV-VDNEGALQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRR 482
[Close]
BLAST of CV887198 vs. ExPASy Swiss-Prot
Match: WDR13_HUMAN (WD repeat-containing protein 13 OS=Homo sapiens GN=WDR13 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.050e-23
Identity = 66/173 (38.15%), Postives = 101/173 (58.38%), Query Frame = -3 
Query:  262 DHTGQLLFCGDAQGCIYSISMESHSGALSRSHRHRTTGKRKCPVTTVQYRSF-SLLAGGPVLLTCTQDGNLSFFSVALEIQGYLTFRCSLKLAPRVHSIRASFCPLLSLEKGEYIVAGSEDSNVYFYDLAKPKHSCVNKLQGHRFPVVAVAWNHGENLLASSDLYGIVIVWKR 777
            D  G+LL+ GD +G ++S   +  +G L+++ R         PVT++  RS+ S  A  P LL       L  + V ++ +G L  + S  +    H +R+ FCPL+S  +G  +V GSED  V+F+D+ +   + VNKLQGH  PV+ V++N  E+LLASSD  G+VIVW+R
Sbjct:  313 DAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKR--LVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYRV-VDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRR 482
The following BLAST results are available for this feature:
BLAST of CV887198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
WDR13_PONAB1.050e-2338.15WD repeat-containing protein 13 OS=Pongo abelii GN... [more]
WDR13_PANTR1.050e-2338.15WD repeat-containing protein 13 OS=Pan troglodytes... [more]
WDR13_MOUSE1.050e-2338.15WD repeat-containing protein 13 OS=Mus musculus GN... [more]
WDR13_HUMAN1.050e-2338.15WD repeat-containing protein 13 OS=Homo sapiens GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029G10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887198 ID=CV887198; Name=CV887198; organism=Citrus sinensis; type=EST; length=785bp
TCTGTCTCAGTTTGTCGACAAATTACACATCATCATGCAAGCCTTTTATA
TTACATGACGTTTTGAGTACAAAATTCGATACAAACTACTCTAATTCAGT
TTCCATAGCAGTTTGATACAATGATTCATGAAATACACCCATACAAATGG
ATCATCAAAAGAGGACGGGCAAAACAAAGTTAAAATCCTTTCCGCCTTTG
TGAATGTATCTTAGAACTTTCTTTTTCACCATACCAAGATTTGTTCCTAA
CTTGTCTTTGCTCTCTTCCATACAATGACAATCCCATAAAGATCAGAAGA
TGCTAGCAAGTTCTCTCCATGGTTCCAAGCGACTGCAACAACTGGAAAAC
GGTGACCCTGCAGCTTGTTCACGCACGAATGCTTTGGCTTTGCTAAATCA
TAGAAGTACACATTTGAATCCTCACTTCCAGCAACTATGTATTCTCCTTT
TTCAAGGGAAAGCAAAGGGCAGAATGAAGCTCGAATGCTGTGCACTCTAG
GAGCTAATTTAAGTGAGCAACGAAAAGTAAGATAACCCTGAATTTCCAGT
GCTACACTGAAGAAAGACAAATTTCCATCTTGAGTACATGTCAGCAACAC
AGGACCCCCTGCCAACAGAGAGAAACTCCGATACTGCACAGTTGTGACTG
GACATTTGCGCTTCCCGGTAGTTCGATGACGATGAGAACGGGATAATGCA
CCCGAGTGGGATTCCATACTTATTGAGTATATGCATCCCTGTGCATCCCC
GCAGAAAAGGAGCTGACCAGTGTGATCATGATCCA
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