CV887194

Overview
NameCV887194
Unique NameCV887194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 3.041e-72
Identity = 132/217 (60.83%), Postives = 166/217 (76.50%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDN-GDYQSAMALANGASNLYAFRM---QQQNLHQGTG 733
            M RGKI+IKRIEN TNRQVTYSKRRNG+FKKA EL+VLCDAKVS+IM S+T K HEYISPTT TK++FDQYQK++GVDLWS+HY KMQE  +KL E+N  LR++IRQRMGE L+DL +E++  L ++M +S   +RERK+ VI  Q DT KKKVRN+EE H N++L+F+ + +DPH+GLVDN GDY S +   NG   + A R+       LH G G
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEFDARREDPHFGLVDNEGDYNSVLGFPNGGPRIIALRLPTNHHPTLHSGGG 217          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.156e-71
Identity = 135/224 (60.27%), Postives = 169/224 (75.45%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVD-NGDYQSAMALANGASNLYAFRMQ----QQNLHQGTGGYGSSD 751
            M RGKI+IKRIEN TNRQVTYSKRRNG+FKKA ELTVLCDAKVS+IM S+TGK HE+ISP+ TTK++FD YQK++GVDLW++HY KMQE  RKLKE+N  LRK+IRQRMGE L+DL +E+L  L +N+ +S   +RERK+ VI  Q +T+KKKVRN+EE H N+LL+F+ + +DP YGLV+  GDY S +   NG   + A R+Q    Q N H      G SD
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRNLLLEFDARQEDP-YGLVEQEGDYNSVLGFPNGGHRILALRLQPNHHQPNHHHHLHSGGGSD 223          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 1.199e-60
Identity = 120/212 (56.60%), Postives = 156/212 (73.58%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDN-GDYQSAMALANGASNLYAFRM--QQQNLH 721
            MGRGKIEIKRIEN TNRQVTYSKRR GI KKA+ELTVLCDA+V++IMFS+TGK+HE+ SP+T  K +FD+YQ+++G  LW   Y  MQ +   LK+IN  LR +IRQRMGEDLD L F+ELRGLEQN+ ++   VR RK+HVI TQT+TYKKKV++  E +  +  +   + ++P +G VDN G      A A  A++++AFR+   Q NLH
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQTETYKKKVKHSYEAYETLQQELGLR-EEPAFGFVDNTGGGWDGGAGAGAAADMFAFRVVPSQPNLH 211          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.488e-60
Identity = 117/210 (55.71%), Postives = 148/210 (70.48%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDN-GDYQSAMALANGASNLYAFRMQQQNLH 721
            M RGKI+IKRIEN TNRQVTYSKRRNG+FKKA ELTVLCDA+VS+IMFS++ K HEYISP TTTK++ D YQ    VD+W+T Y +MQE+ RKL E N  LR  I+QR+GE LD+L  +ELR LE  M ++   VRERKF  +  Q +T KKK ++ ++   N++ + E + +DPHYGLVDN GDY S +      S  YA R  Q + H
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNLIHELELRAEDPHYGLVDNGGDYDSVLGYQIEGSRAYALRFHQNHHH 210          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.156e-57
Identity = 110/207 (53.14%), Postives = 150/207 (72.46%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHY--GLVDNGDYQSAMALA-----NGASNLYA 694
            MGRGK+EI++IEN TNRQVT+SKRRNGI KKAQELTVLCDAKVSL+M S+T K H Y+SP  + KKM+D+YQK  GVDLW   + +MQE +RK+ E+N+ LR++I +RMG DL+ LT  EL  L+Q M  +   +R +K+H IK QT T +KK++NLEERH +++++ E K+  P +  G  D  +Y++A A A       A+NL+A
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKIEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKIKNLEERHTDLVMELEAKFRGPQFAIGEDDPRNYEAAAAAAVYGNDVAAANLFA 207          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.077e-37
Identity = 76/161 (47.20%), Postives = 109/161 (67.70%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERH 577
            MGRGKIEIKRIEN +NRQVTYSKRRNGI KKA+E+TVLCDAKVSLI+F N+GK HEY SP+TT   M D YQK+ G  LW   +  +     ++K+ N+ ++  +R   GED++ L  +EL  LE+ +++  +++  ++  +++      +K  + LEE H
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQSEILR----MVRKNDQILEEEH 157          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.973e-35
Identity = 91/227 (40.09%), Postives = 137/227 (60.35%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGN---ILLDFETKYDDPHYGLVDNG------DYQSAMALANG----ASNLYAFRMQ--QQNLHQGT 730
            MGRGKIEIKRIEN TNRQVT+SKRR G+ KKA EL+VLCDA++ LI+FS++GK  EY S +++ KK+ ++YQK  G  +       +     ++K  N KL+ +IR+ MGEDL  LT  EL  L Q + S+++ VR RK  ++  Q +  ++K R LE+++ +   +L + +   +     L++ G      D ++A A   G      +L AFR+Q  Q NL + +
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKVSGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAEQQAAVEGVQEPLLEFGVFCPPPDNKTAAAANAGPLHLGHHLPAFRLQPTQPNLQESS 227          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.624e-35
Identity = 82/224 (36.61%), Postives = 132/224 (58.93%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIK------------TQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDNGDYQSAMALANGASNLYAFRMQ--QQNLHQ 724
            MGRGKIEIKRIEN +NRQVTYSKRRNGI KKA+E++VLCDA VS+I+F+++GK HE+ SP+TT   M D Y K  G  LW   +  +     ++K+ N+ ++ ++R   GED+  L ++EL  LE  + +  + ++ ++   ++             Q+  +K +  +L+  + N+ ++ +  YD  H+  +   DY++ M         +AFR+Q  Q NL +
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNKQMEFVRMMRKHNEMVEEENQSLQFKLRQMHLDPMNDNV-MESQAVYDHHHHQNI--ADYEAQMP--------FAFRVQPMQPNLQE 213          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.747e-33
Identity = 80/206 (38.83%), Postives = 124/206 (60.19%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKM---QESYRKLKEINNKLRK---DIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFETKYDDPHYGLVDNGDYQSAMALANGASNLYA 694
            MGRGKIEIKRIEN TNRQVT+SKRR G+ KKA EL VLCDA+V +++FS+TGK  EY SPT + +++ + YQ      + +TH+ ++   Q+ + ++  + N++ K    IR+  G+DL +LT  ++  LEQ +  S   VR RK  ++  Q D  ++K   LE+++  +        ++ H   V  GD ++ + +A   S L A
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQ-----TVTNTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSFLCRMIN---ENHHQAAVGGGDVKAMVEMAPVLSMLTA 198          
BLAST of CV887194 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.077e-32
Identity = 72/167 (43.11%), Postives = 107/167 (64.07%), Query Frame = 2
Query:   95 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEIN------NKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERH 577
            MGRGKIEIKRIEN TNRQVT+SKRR G+ KKA EL VLCDA+V +++FS+TGK  EY SP  + +++ +QYQ +      ++H+ ++    + L E+        KL   IR+  G+DL  LT +++  LEQ +  S + VR RK  ++  Q D  ++K + LE+++
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHAT-----NSHFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQN 162          
The following BLAST results are available for this feature:
BLAST of CV887194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
DEFA_ANTMA3.041e-7260.83Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
MADS1_PETHY1.156e-7160.27Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
MAD16_ORYSJ1.199e-6056.60MADS-box transcription factor 16 OS=Oryza sativa s... [more]
AP3_ARATH3.488e-6055.71Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
CMB2_DIACA6.156e-5753.14MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
MADS2_PETHY7.077e-3747.20Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
GGM13_GNEGN2.973e-3540.09MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
GLOB_ANTMA6.624e-3536.61Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
MAD29_ORYSJ4.747e-3338.83MADS-box transcription factor 29 OS=Oryza sativa s... [more]
M17_MAIZE3.077e-3243.11MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029G08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887194 ID=CV887194; Name=CV887194; organism=Citrus sinensis; type=EST; length=837bp
TGCAACTGAAAATCCAATTAAGCTCTTAGCTCTTATCATTTTTGTTCGGT
AATACTACTGTGAATAGCTATAGCTCGGTGAATTATTCTGAAATATGGGT
AGGGGAAAGATCGAGATCAAGAGAATTGAAAACCCTACCAACAGACAAGT
CACTTACTCTAAGCGGAGAAATGGTATTTTCAAGAAAGCACAAGAACTCA
CTGTTCTTTGTGATGCTAAGGTTTCTCTCATCATGTTCTCTAACACTGGC
AAATTTCACGAGTACATAAGCCCTACAACCACGACTAAGAAGATGTTCGA
TCAATACCAGAAGAGTTTAGGGGTTGATCTCTGGAGCACCCACTACGCGA
AAATGCAAGAGTCGTACAGGAAACTGAAGGAGATCAATAATAAGCTAAGG
AAAGACATCAGGCAGAGGATGGGAGAGGATTTGGATGATCTAACCTTTGA
AGAACTGCGTGGTCTTGAGCAAAACATGTCTTCTTCTGCGGCTACCGTTC
GTGAAAGAAAGTTTCATGTGATCAAAACGCAGACAGATACCTACAAGAAG
AAGGTAAGAAACTTGGAGGAAAGGCATGGAAACATCCTGCTGGACTTTGA
AACAAAATATGACGATCCACATTACGGATTAGTTGACAATGGAGACTATC
AATCCGCAATGGCATTAGCAAATGGAGCGTCCAACCTGTATGCATTTCGC
ATGCAACAGCAAAACCTTCACCAGGGGACTGGGGGGTATGGATCCAGTGA
TCTTACCCTTGCCTGATTGCATTTGAGAGGTTAATTACATCGACCGATCT
CTTCAGGTTTCAAAATTAATTCTAAATGTGTGCTATC
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