EL492497

Overview
NameEL492497
Unique NameEL492497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length194
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1557 contig Csv1_Contig1557:262..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EL492497 vs. ExPASy Swiss-Prot
Match: SYP52_ARATH (Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.289e-14
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = -1 
Query:   18 NGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPIRRK 179
            NGM+SER++   +GP++QR ASAIRRKITILGTRLDSLQSLL K+PGKQ +  K
Sbjct:   23 NGMMSERNASGLTGPDAQRRASAIRRKITILGTRLDSLQSLLVKVPGKQHVSEK 76
[Close]
BLAST of EL492497 vs. ExPASy Swiss-Prot
Match: SYP51_ARATH (Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.078e-12
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = -1 
Query:   18 NGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPIRRK 179
            NGMISERSS   +GP++QR ASAIRRKITI G +LDSLQSLL+++ GK PI  K
Sbjct:   23 NGMISERSSSAVTGPDAQRRASAIRRKITIFGNKLDSLQSLLAEIHGK-PISEK 75
The following BLAST results are available for this feature:
BLAST of EL492497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SYP52_ARATH3.289e-1470.37Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 ... [more]
SYP51_ARATH3.078e-1268.52Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC1430 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC1430, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492497 ID=EL492497; Name=EL492497; organism=Citrus sinensis; type=EST; length=194bp
GTCTTCGCGATTCATCTCTTTCTCCGAATGGGCTGCTTCCCGGGAAGCTT
AGATAAAAGGGACTGCAAGCTATCCAATCTGGTTCCTAATATGGTAATCT
TCCTCCGTATGGCAGATGCATGACGCTGGGATTCAGGTCCAGATGCGGGC
ATCGAACTTCGTTCTGATATCATGCCATTATTCAGGGACTCATC
back to top