EL492495

Overview
NameEL492495
Unique NameEL492495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length249
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6080 contig Csv1_Contig6080:197..444. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492495 vs. ExPASy Swiss-Prot
Match: RL31_PERFR (60S ribosomal protein L31 OS=Perilla frutescens GN=RPL31 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.494e-15
Identity = 41/64 (64.06%), Postives = 44/64 (68.75%), Query Frame = 3
Query:   48 EIRKFAQKAMGTTDVRVDVELNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEI 239
            EIRKFAQKAMGTTDVRVDV+LNK +WS                  ND+EDAKEE YSLVTVAEI
Sbjct:   41 EIRKFAQKAMGTTDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEI 104          
BLAST of EL492495 vs. ExPASy Swiss-Prot
Match: RL31_NICGU (60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.482e-15
Identity = 41/64 (64.06%), Postives = 44/64 (68.75%), Query Frame = 3
Query:   48 EIRKFAQKAMGTTDVRVDVELNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEI 239
            EIRKFAQKAMGT DVRVDV+LNKQ+WS                  ND+EDAKEE YSLVTVAEI
Sbjct:   40 EIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEI 103          
BLAST of EL492495 vs. ExPASy Swiss-Prot
Match: RL313_ARATH (60S ribosomal protein L31-3 OS=Arabidopsis thaliana GN=RPL31C PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.482e-15
Identity = 40/67 (59.70%), Postives = 46/67 (68.66%), Query Frame = 3
Query:   48 EIRKFAQKAMGTTDVRVDVELNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEITTQ 248
            EIRKFA+KAMGT DVRVDV+LNKQ+WS                  ND+EDAKEEF+SLVTVAEI  +
Sbjct:   39 EIRKFAEKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAE 105          
BLAST of EL492495 vs. ExPASy Swiss-Prot
Match: RL31_PANGI (60S ribosomal protein L31 OS=Panax ginseng GN=RPL31 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.468e-14
Identity = 40/64 (62.50%), Postives = 44/64 (68.75%), Query Frame = 3
Query:   48 EIRKFAQKAMGTTDVRVDVELNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEI 239
            EIRKFAQKAMGT DVRVDV+LNKQ+WS                  ND+EDAKEE YSLVTVA+I
Sbjct:   40 EIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAKI 103          
BLAST of EL492495 vs. ExPASy Swiss-Prot
Match: RL311_ARATH (60S ribosomal protein L31-1 OS=Arabidopsis thaliana GN=RPL31A PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.468e-14
Identity = 40/67 (59.70%), Postives = 45/67 (67.16%), Query Frame = 3
Query:   48 EIRKFAQKAMGTTDVRVDVELNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEITTQ 248
            EIRKFA KAMGT DVRVDV+LNKQ+WS                  ND+EDAKEEF+SLVTVAEI  +
Sbjct:   39 EIRKFALKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAE 105          
BLAST of EL492495 vs. ExPASy Swiss-Prot
Match: RL31_PICMA (60S ribosomal protein L31 OS=Picea mariana GN=RPL31 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.223e-14
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = 3
Query:   48 EIRKFAQKAMGTTDVRVDVELNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEI 239
            EIRKFAQKAMGTTDVR+DV+LNK VWS                  NDEEDAK+E YS+VTVAE+
Sbjct:   40 EIRKFAQKAMGTTDVRLDVKLNKAVWSRGIRSVPRRMRVRISRKRNDEEDAKDELYSIVTVAEV 103          
BLAST of EL492495 vs. ExPASy Swiss-Prot
Match: RL312_ARATH (60S ribosomal protein L31-2 OS=Arabidopsis thaliana GN=RPL31B PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.223e-14
Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = 3
Query:   48 EIRKFAQKAMGTTDVRVDVELNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAEITTQ 248
            EIRKFA+K MGT DVRVDV+LNKQ+WS                  ND+EDAKEEF+SLVTVAEI  +
Sbjct:   39 EIRKFAEKEMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAE 105          
BLAST of EL492495 vs. ExPASy Swiss-Prot
Match: RL31_CHLRE (60S ribosomal protein L31 OS=Chlamydomonas reinhardtii GN=RPL31 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.940e-12
Identity = 36/63 (57.14%), Postives = 40/63 (63.49%), Query Frame = 3
Query:   48 EIRKFAQKAMGTTDVRVDVELNKQVWSXXXXXXXXXXXXXXXXXXNDEEDAKEEFYSLVTVAE 236
            EIRKFA K MGT+DVR+DV+LNK VWS                  ND+EDAKEE YS VTVAE
Sbjct:   39 EIRKFASKVMGTSDVRLDVKLNKAVWSKGIKNVPTRLRIVISRRRNDDEDAKEEMYSFVTVAE 101          
The following BLAST results are available for this feature:
BLAST of EL492495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RL31_PERFR6.494e-1564.0660S ribosomal protein L31 OS=Perilla frutescens GN... [more]
RL31_NICGU8.482e-1564.0660S ribosomal protein L31 OS=Nicotiana glutinosa G... [more]
RL313_ARATH8.482e-1559.7060S ribosomal protein L31-3 OS=Arabidopsis thalian... [more]
RL31_PANGI2.468e-1462.5060S ribosomal protein L31 OS=Panax ginseng GN=RPL3... [more]
RL311_ARATH2.468e-1459.7060S ribosomal protein L31-1 OS=Arabidopsis thalian... [more]
RL31_PICMA3.223e-1460.9460S ribosomal protein L31 OS=Picea mariana GN=RPL3... [more]
RL312_ARATH3.223e-1458.2160S ribosomal protein L31-2 OS=Arabidopsis thalian... [more]
RL31_CHLRE3.940e-1257.1460S ribosomal protein L31 OS=Chlamydomonas reinhar... [more]
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Properties
Property NameValue
Genbank descriptionC1402 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC1402, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492495 ID=EL492495; Name=EL492495; organism=Citrus sinensis; type=EST; length=249bp
CGNTCCNGCNGGCTGCCCTTCAGAAGAAAGCTCCAAAAGCCATAAAGGAA
ATTAGGAAGTTTGCTCAAAAAGCCATGGGGACAACTGATGTTAGGGTGGA
TGTGGAGCTCAACAAGCAAGTGTGGAGCCGTGGTATCCGTAGTGTACCAA
GGAGAATTCGTGTTCGTGTTGCACGGAAGAGAAACGATGAGGAAGATGCC
AAAGAAGAGTTCTACTCTCTCGTCACTGTTGCCGAGATCACTACGCAGT
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