CV887161

Overview
NameCV887161
Unique NameCV887161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887161 vs. ExPASy Swiss-Prot
Match: FBK30_ARATH (F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana GN=At1g80440 PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 8.588e-76
Identity = 137/226 (60.62%), Postives = 172/226 (76.11%), Query Frame = 2
Query:   74 MDLIPDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFRRSRKDTRCSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLATWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYST 751
            M+LIP+LP+++A ECL R SY+QF  I+SVC+ W  E+S  +F   RK +R S++LL ++QARVD +   G  K  ATP YRI+VLE GSG W+ELPPIPG   GLPLFC+L +VG +L+V+GGLD  TW+A  SVFVF+ +++ WR GA MPG RR  FGCASD DRTV VAGGH+E+K AL SAM YDV+ D+W  LPDM+RERDECKAVFH G+  VIGGY+T
Sbjct:    1 MELIPNLPDDVARECLLRSSYQQFPVIASVCRAWNREVSLSQFLHQRKASRHSQELLILSQARVDPA---GSGKIIATPEYRISVLESGSGLWTELPPIPGQTKGLPLFCRLVSVGSDLIVLGGLDPITWQAHDSVFVFSFLTSKWRVGATMPGVRRSFFGCASDSDRTVLVAGGHNEEKCALTSAMVYDVSEDKWTFLPDMARERDECKAVFHAGRFHVIGGYAT 223          
BLAST of CV887161 vs. ExPASy Swiss-Prot
Match: FBK46_ARATH (F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana GN=At2g44130 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 6.226e-34
Identity = 94/262 (35.88%), Postives = 136/262 (51.91%), Query Frame = 2
Query:   47 TKKK--KFDSVMDLIPDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFRRSRKDTRCSEQLLFMTQA---------------RVDQ--SRKSGVPKRFATPVYRITVLELGSGEWSELPPIPGFPDG--LPLFCQLSAV--GPELVVIGGLDLATWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECK--AVFHCGKLLVIGGYSTNA 757
            +KKK   F    +LIP LP+E+ALECL RV ++  + + SVC+ W+S +S   F + R+    +E LL + Q                 VD+  S     P+ F TP + ++V       W  +     FP+   +PLFC+   +    ++++IGG D  T + +  V+V       WRRGA M   R   F CAS     VYVAGGHD+ KNAL+SA  YDV +DEW+S+  M+  RDEC+  AV    +  V+ GY T +
Sbjct:    6 SKKKGGDFQQCHELIPGLPSELALECLVRVPFQFQSAMRSVCRSWRSLLSDSSFIQERRRCGKTELLLCLVQPLTPPIPASKSVDETLMVDEKKSEDESHPRVFCTPRFGLSVYNAAMSTWHRV----AFPEEEQIPLFCECVVLQDAGKILLIGGWDPETLQPTRDVYVLEFAGRKWRRGAPMKESRSF-FACASVSPTKVYVAGGHDDQKNALRSAEVYDVEKDEWSSVTPMTEGRDECQGFAVGMGLRFCVLSGYGTES 262          
BLAST of CV887161 vs. ExPASy Swiss-Prot
Match: SKI20_ARATH (F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana GN=SKIP20 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.534e-32
Identity = 94/271 (34.69%), Postives = 130/271 (47.97%), Query Frame = 2
Query:   44 GTKKKKFDSVM-DLIPDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFRRSRKDTRCSEQLLFMTQ-------------ARVDQSRKSGV------------PKRFATPVYRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAV--GPELVVIGGLDLATWEASSSVFVFNIISAT-----WRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGK--LLVIGGYST 751
            G  KKK   +  DLIP LP E+A+ECL RV ++  ++I SVC+ WK  IS   F + R     +E LL + Q               + Q +K               P+   TP+Y ++V       W  +      P+ +PLFC+  A+    ++++IGG D  T +    VFV +  +       +RRG  M   R   F CAS G   VYVAGGHD+ KNAL+SA  YDV +DEW+ LP M+  RDEC            V+ GY T
Sbjct:    2 GVSKKKSGEIRGDLIPGLPEELAIECLVRVPFQFHSSIKSVCRSWKCVISSRSFIKERIGFGKAESLLCLVQPLTSPPSPAMMEGGEMSQKKKEEEEGESQMTQQLLQPRITGTPLYGLSVYNATLDTWHRV----AIPERIPLFCECVAIQDAGKVLLIGGWDPETLQPVRDVFVLDFFAGEGSGRRFRRGRPMSAARSF-FACASVGSTKVYVAGGHDDQKNALRSAEVYDVEKDEWSMLPPMTEGRDECHGFSMATDPGFCVLSGYGT 267          
BLAST of CV887161 vs. ExPASy Swiss-Prot
Match: FBK28_ARATH (F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.628e-16
Identity = 69/225 (30.67%), Postives = 106/225 (47.11%), Query Frame = 2
Query:   80 LIPDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFRRSRKDTRCSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDL--ATWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYS 748
            LIP LP+++A +CL+ V   +F ++ SVCK W+  +   EF   R+     E+ L++           G   R+        V++    + S LPP+PG         ++  V  +L+VI G  +   +  AS+ V+ ++    +W R AD+    R  F CA + +  VYV GGH  D  +L SA  YD     W  +  + R R  C A    GKL V+GG S
Sbjct:   39 LIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVLTMNA-----GGKDNRW-------EVMDCLGQKLSSLPPMPG---PAKTGFKVVVVDGKLLVIAGCCMINGSLVASADVYQYDTCLNSWSRLADLEVA-RYDFACA-EVNGHVYVVGGHGVDGESLSSAEVYDPETCTWTFIESLRRPRWGCFASAFNGKLYVMGGRS 246          
BLAST of CV887161 vs. ExPASy Swiss-Prot
Match: SKI11_ARATH (F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 5.480e-14
Identity = 58/221 (26.24%), Postives = 102/221 (46.15%), Query Frame = 2
Query:   80 LIPDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFRRSRKDTRCSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLATWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGG 742
            LI ++  + +++CL R S   + +I+S+ + ++S +   E  R R+     E  ++ +   ++      V +R                 W +LP +P     +    +  AVG +L+V+G  D +    S  ++ +++++ +W  G  M    R LFG AS G+  ++ AGG D     L  A  Y+     W +LP M++ R  C  VF  GK  VIGG
Sbjct:  117 LINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRLRRQNGFVEHWVYFSCQLLEWVAFDPVERR-----------------WMQLPTMPSSVTFMCADKESLAVGTDLLVLGKDDFS----SHVIYRYSLLTNSWSSGMKM-NSPRCLFGSASLGEIAIF-AGGCDSQGKILDFAEMYNSELQTWITLPRMNKPRKMCSGVFMDGKFYVIGG 314          
BLAST of CV887161 vs. ExPASy Swiss-Prot
Match: FBK15_ARATH (F-box/kelch-repeat protein At1g26930 OS=Arabidopsis thaliana GN=At1g26930 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.639e-13
Identity = 66/224 (29.46%), Postives = 99/224 (44.20%), Query Frame = 2
Query:   80 LIPDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFRRSRKDTRCSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLATWEASSSV-FVFNIISATW--RRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGG 742
            LIP +  + +L CL R S   + +I+SV +  +S I   E  R R+     E  ++                 F+  +      +  S  W  LP +P          +  AVG +L+V G      WE SS V + +++++ +W   +  +MP   R LFG AS G+  V +AGG D     L +A  Y+     W  LP M++ R  C  VF  GK  VIGG
Sbjct:   71 LIPGMNRDDSLSCLIRCSRADYCSIASVNRSLRSLIRSGEIYRLRRLQGTLEHWVY-----------------FSCHLNEWEAFDPRSKRWMHLPSMPQNECFRYADKESLAVGTDLLVFG------WEVSSYVIYRYSLLTNSWSTAKSMNMP---RCLFGSASYGEIAV-LAGGCDSSGRILDTAELYNYEDQTWLVLPGMNKRRKMCSGVFMDGKFYVIGG 267          
BLAST of CV887161 vs. ExPASy Swiss-Prot
Match: FBK22_ARATH (F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 58/217 (26.73%), Postives = 100/217 (46.08%), Query Frame = 2
Query:   38 KRGTKKKKFDSVMDLIPDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFRRSRKDTRCSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPPIP-GFPDGLPLFCQLSAVGPELVVIGGLDLATWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDED-KNALKSAMAYDVARDEWASLPDMS 682
            ++ +K+++      L+P LP+++A+ CL RV   +   +  VCK W    S   F   RK    SE+ +++ +    + R   +      P+ ++         W  LPP+P  + + +   C + + G  L + GG D         +F +N  +  W R  DM   +R  FGC    +  +YVAGG  E  +  L+SA  YD  ++ W+ + DMS
Sbjct:   64 RKNSKRERTRIQPPLLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFK----RDRDGKISWNTFDPISQL---------WQPLPPVPREYSEAVGFGCAVLS-GCHLYLFGGKDPLRGSMRRVIF-YNARTNKWHRAPDML-RKRHFFGCCVI-NNCLYVAGGECEGIQRTLRSAEVYDPNKNRWSFIADMS 263          
BLAST of CV887161 vs. ExPASy Swiss-Prot
Match: FBK85_ARATH (F-box/kelch-repeat protein At4g19870 OS=Arabidopsis thaliana GN=At4g19870 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 61/213 (28.64%), Postives = 95/213 (44.60%), Query Frame = 2
Query:   83 IPDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFRRSRKDTRCSEQLLFMTQARVDQSRKSGVPKRF---ATPVYRITVLELGSGEWSE----LPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLATWEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDEC 700
            +  LP+EI   CL+R+S   + T+S V K ++S IS  E   +R   R +E+ +++  +     +    PK F     P    +++E    +       L PIP   +  P+     AVG E+ VIGG        SS+V + +  S TWR    M   R+  F C  DG   +YV GG+++   +   A  +D+    W  L D   E   C
Sbjct:   30 LSSLPDEIVENCLARISRSYYPTLSIVSKSFRSIISSTELYVARSHLRNTEECVYVCLS----DKSFEFPKWFTLWVNPNQANSMVEKKRKKKKTIGKLLVPIPS-SNLSPVSKSAIAVGSEIYVIGG--KVDGALSSAVRILDCRSNTWRDAPSMTVARKRPFICLYDG--KIYVIGGYNKLSESEPWAEVFDIKTQTWECLSDPGTEIRNC 233          
BLAST of CV887161 vs. ExPASy Swiss-Prot
Match: SKI30_ARATH (F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana GN=SKIP30 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 57/233 (24.46%), Postives = 91/233 (39.06%), Query Frame = 2
Query:   65 DSVMDLIPDLPNEIALECLSRVSYKQFATISSVCKGWKSEISRPEFRRSRKDTRCSEQLLFMTQARVDQSRKSGVPKRFATPVYRITVLELGSGEWSELPPIPGFPDGLPLFCQLSAVGPELVVIGGLDLAT--------WEASSSVFVFNIISATWRRGADMPGGRRMLFGCASDGDRTVYVAGGHDEDKNALKSAMAYDVARDEWASLPDMSRERDE-CKAVFHCGKLLVI 736
            +++  L+  +P  +AL CL+ V       +  V + W++ I   E  R RK+ R SE LL +                   P     V       W  LP +P     L  F  ++  G   V+ GG D  +          A+  V+ ++ +   W   A M   R M   C   G   + VAGG    + ++  A  YD   D W S+PD+ +  +  C  +   GK+ V+
Sbjct:    6 ETMSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCVCA---------------FDPENIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSPVTGDHDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQG--KIVVAGGFTTCRKSISGAEMYDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVL 221          
The following BLAST results are available for this feature:
BLAST of CV887161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
FBK30_ARATH8.588e-7660.62F-box/kelch-repeat protein At1g80440 OS=Arabidopsi... [more]
FBK46_ARATH6.226e-3435.88F-box/kelch-repeat protein At2g44130 OS=Arabidopsi... [more]
SKI20_ARATH1.534e-3234.69F-box/kelch-repeat protein SKIP20 OS=Arabidopsis t... [more]
FBK28_ARATH2.628e-1630.67F-box/kelch-repeat protein At1g67480 OS=Arabidopsi... [more]
SKI11_ARATH5.480e-1426.24F-box/kelch-repeat protein SKIP11 OS=Arabidopsis t... [more]
FBK15_ARATH4.639e-1329.46F-box/kelch-repeat protein At1g26930 OS=Arabidopsi... [more]
FBK22_ARATH3.927e-1226.73F-box/kelch-repeat protein At1g55270 OS=Arabidopsi... [more]
FBK85_ARATH3.324e-1128.64F-box/kelch-repeat protein At4g19870 OS=Arabidopsi... [more]
SKI30_ARATH9.673e-1124.46F-box/kelch-repeat protein SKIP30 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029E06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887161 ID=CV887161; Name=CV887161; organism=Citrus sinensis; type=EST; length=757bp
ATTCACTAAGACCCTTCGCTTTAAATTTCTTCCTTTTAAAAGGGGAACAA
AAAAAAAAAAATTCGACTCAGTAATGGATCTAATCCCGGATCTTCCCAAC
GAAATCGCCCTTGAATGTTTATCTCGGGTTTCCTACAAGCAGTTCGCCAC
CATTTCGTCCGTTTGCAAAGGCTGGAAGTCCGAGATATCGCGTCCCGAAT
TTCGCCGAAGCAGGAAAGACACACGCTGCAGCGAACAGCTTCTGTTTATG
ACCCAAGCCCGAGTTGACCAGAGCAGGAAATCGGGCGTTCCAAAGAGATT
CGCTACCCCTGTATACCGGATTACGGTTTTGGAGCTTGGTTCCGGTGAAT
GGTCCGAGTTGCCGCCGATTCCCGGATTTCCTGATGGGTTGCCTCTGTTT
TGTCAGCTCTCTGCTGTCGGGCCGGAGCTTGTAGTGATTGGCGGGCTCGA
CCTGGCCACGTGGGAGGCATCAAGTTCCGTGTTTGTTTTTAATATCATTT
CTGCAACATGGCGCCGTGGGGCCGACATGCCGGGTGGACGGCGGATGTTG
TTCGGATGTGCATCCGACGGCGATCGGACGGTGTACGTCGCTGGGGGGCA
CGATGAGGACAAAAACGCTTTGAAGTCAGCAATGGCGTATGACGTGGCCA
GAGATGAGTGGGCCTCGCTTCCCGACATGTCAAGGGAGCGTGACGAGTGC
AAAGCGGTTTTCCACTGTGGCAAGCTCCTCGTCATTGGAGGGTACTCGAC
CAATGCG
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