CV887153

Overview
NameCV887153
Unique NameCV887153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COB22_ARATH (Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 2.926e-68
Identity = 122/128 (95.31%), Postives = 127/128 (99.22%), Query Frame = 3 
Query:  126 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            MPLRLEIKRKLAQRSERVKSVDLHP+EPWILASLYSGT+CIWNYQ+Q MAKSFEVTELPVRSAKFVARKQWVVAGADDM+IRVYNYNTMDKVKVFEAH+DYIRCVAVHPTLPYVLSSSDDMLIKLWDW
Sbjct:    1 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQVMAKSFEVTELPVRSAKFVARKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128
[Close]
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COB21_ARATH (Coatomer subunit beta'-1 OS=Arabidopsis thaliana GN=At1g79990 PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 1.452e-67
Identity = 119/128 (92.97%), Postives = 125/128 (97.66%), Query Frame = 3 
Query:  126 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            MPLRLEIKRK AQRSERVKSVDLHP+EPWILASLYSGT+CIWNYQ+QTM KSF+VTELPVRSAKF+ARKQWVVAGADDMFIRVYNYNTMDK+KVFEAH DYIRCVAVHPTLPYVLSSSDDMLIKLWDW
Sbjct:    1 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILASLYSGTLCIWNYQTQTMVKSFDVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKIKVFEAHADYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128
[Close]
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COB21_ORYSJ (Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica GN=Os06g0143900 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 4.225e-67
Identity = 119/128 (92.97%), Postives = 126/128 (98.44%), Query Frame = 3 
Query:  126 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            MPLRLEIKRK AQRSERVKSVDLHP+EPWIL+SLYSG+VCIW+YQSQTM KSFEV+ELPVRSAKF++RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW
Sbjct:    1 MPLRLEIKRKFAQRSERVKSVDLHPTEPWILSSLYSGSVCIWDYQSQTMVKSFEVSELPVRSAKFISRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128
[Close]
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COB23_ARATH (Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 9.412e-67
Identity = 118/128 (92.19%), Postives = 125/128 (97.66%), Query Frame = 3 
Query:  126 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            MPLRL+IKRK AQRSERVKSVDLHP+EPWILASLYSGTVCIWNYQ+QT+ KSFEVTELPVRSAKF+ RKQWVVAGADDM+IRVYNYNTMDKVKVFEAH+DYIRCVAVHPTLPYVLSSSDDMLIKLWDW
Sbjct:    1 MPLRLDIKRKFAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQTQTITKSFEVTELPVRSAKFIPRKQWVVAGADDMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 128
[Close]
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COB22_ORYSJ (Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica GN=Os02g0209100 PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.229e-66
Identity = 117/128 (91.41%), Postives = 126/128 (98.44%), Query Frame = 3 
Query:  126 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            MPLRL+IKRKLAQRSERVKSVDLHP+EPWIL+SLYSG+VCIWNYQ+QTM KSFEVTELPVRS+KF+ARKQW+VAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT P+VLSSSDDMLIKLWDW
Sbjct:    1 MPLRLDIKRKLAQRSERVKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSSKFIARKQWIVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDDMLIKLWDW 128
[Close]
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COB23_ORYSJ (Putative coatomer subunit beta'-3 OS=Oryza sativa subsp. japonica GN=Os02g0209000 PE=3 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 7.968e-66
Identity = 116/128 (90.62%), Postives = 124/128 (96.88%), Query Frame = 3 
Query:  126 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            MPLRL+IKRKLAQRSER KSVDLHP+EPWIL+SLYSG+VCIWNYQ+QTM KSFEVTELPVRS+KF+ RKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPT P+VLSSSDDMLIKLWDW
Sbjct:    1 MPLRLDIKRKLAQRSERAKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPVRSSKFITRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDDMLIKLWDW 128
[Close]
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COPB2_PONAB (Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.967e-56
Identity = 95/128 (74.22%), Postives = 119/128 (92.97%), Query Frame = 3 
Query:  126 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            MPLRL+IKRKL  RS+RVKSVDLHP+EPW+LASLY+G+VC+WN+++QT+ K+FEV +LPVR+AKFVARK WVV GADDM IRV+NYNT+++V +FEAH+DYIRC+AVHPT P++L+SSDDMLIKLWDW
Sbjct:    1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 128
[Close]
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COPB2_MOUSE (Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 1.967e-56
Identity = 95/128 (74.22%), Postives = 119/128 (92.97%), Query Frame = 3 
Query:  126 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            MPLRL+IKRKL  RS+RVKSVDLHP+EPW+LASLY+G+VC+WN+++QT+ K+FEV +LPVR+AKFVARK WVV GADDM IRV+NYNT+++V +FEAH+DYIRC+AVHPT P++L+SSDDMLIKLWDW
Sbjct:    1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 128
[Close]
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COPB2_MACFA (Coatomer subunit beta' OS=Macaca fascicularis GN=COPB2 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.967e-56
Identity = 95/128 (74.22%), Postives = 119/128 (92.97%), Query Frame = 3 
Query:  126 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            MPLRL+IKRKL  RS+RVKSVDLHP+EPW+LASLY+G+VC+WN+++QT+ K+FEV +LPVR+AKFVARK WVV GADDM IRV+NYNT+++V +FEAH+DYIRC+AVHPT P++L+SSDDMLIKLWDW
Sbjct:    1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 128
[Close]
BLAST of CV887153 vs. ExPASy Swiss-Prot
Match: COPB2_HUMAN (Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 1.967e-56
Identity = 95/128 (74.22%), Postives = 119/128 (92.97%), Query Frame = 3 
Query:  126 MPLRLEIKRKLAQRSERVKSVDLHPSEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDW 509
            MPLRL+IKRKL  RS+RVKSVDLHP+EPW+LASLY+G+VC+WN+++QT+ K+FEV +LPVR+AKFVARK WVV GADDM IRV+NYNT+++V +FEAH+DYIRC+AVHPT P++L+SSDDMLIKLWDW
Sbjct:    1 MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKNWVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDW 128
The following BLAST results are available for this feature:
BLAST of CV887153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
COB22_ARATH2.926e-6895.31Coatomer subunit beta'-2 OS=Arabidopsis thaliana G... [more]
COB21_ARATH1.452e-6792.97Coatomer subunit beta'-1 OS=Arabidopsis thaliana G... [more]
COB21_ORYSJ4.225e-6792.97Coatomer subunit beta'-1 OS=Oryza sativa subsp. ja... [more]
COB23_ARATH9.412e-6792.19Coatomer subunit beta'-3 OS=Arabidopsis thaliana G... [more]
COB22_ORYSJ1.229e-6691.41Coatomer subunit beta'-2 OS=Oryza sativa subsp. ja... [more]
COB23_ORYSJ7.968e-6690.63Putative coatomer subunit beta'-3 OS=Oryza sativa ... [more]
COPB2_PONAB1.967e-5674.22Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE... [more]
COPB2_MOUSE1.967e-5674.22Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE... [more]
COPB2_MACFA1.967e-5674.22Coatomer subunit beta' OS=Macaca fascicularis GN=C... [more]
COPB2_HUMAN1.967e-5674.22Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029E02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887153 ID=CV887153; Name=CV887153; organism=Citrus sinensis; type=EST; length=510bp
CCCCGGGCTGCAGGCGAATCCCTCCCCTCCCTCTCTTTATTACACCAAAT
TCTCTCTCTGGATCTATAATTTACAACTTCGCTGCAAAAACTTTGATCTC
GATTTCGCAAATCAGAAAATCGAAAATGCCTCTCAGACTCGAAATCAAGA
GAAAACTTGCTCAAAGATCAGAGAGAGTAAAGTCTGTGGATTTGCATCCA
TCTGAACCATGGATTCTAGCGAGTTTGTATTCAGGAACTGTGTGTATCTG
GAACTACCAGTCACAGACTATGGCTAAGTCTTTTGAGGTCACTGAGTTAC
CAGTTAGATCAGCTAAATTTGTGGCCCGCAAGCAATGGGTAGTTGCAGGA
GCTGATGACATGTTTATTCGTGTATACAATTACAATACTATGGACAAAGT
TAAAGTATTTGAGGCTCATACGGATTACATTAGATGTGTGGCTGTTCATC
CTACCCTTCCGTATGTGCTGTCATCATCTGATGATATGCTCATAAAGCTT
TGGGATTGGG
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