CV887150

Overview
NameCV887150
Unique NameCV887150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887150 vs. ExPASy Swiss-Prot
Match: PATL3_ARATH (Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 4.844e-78
Identity = 133/175 (76.00%), Postives = 153/175 (87.43%), Query Frame = -3
Query:  311 KQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFTIDDPATEITVKPATKQNVEIIIYEKCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVDNPTSKKKKLLYRFKVEP 835
            KQ FINVPWWYL F+T+I PFMT R+KSK VFAGPS+S ETLFKYISPE VP+QYGGLSVD CDCNP+F+++D A+EITVKP TKQ VEIIIYEKC +VWEIRV GWEVSY AEFVPE KD YT++IQKP K+ P+DEPV+   FKV+ELGK+LLTVDNPTSKKKKL+YRF V+P
Sbjct:  315 KQAFINVPWWYLVFYTVIGPFMTPRSKSKLVFAGPSRSAETLFKYISPEQVPVQYGGLSVDPCDCNPDFSLEDSASEITVKPGTKQTVEIIIYEKCELVWEIRVTGWEVSYKAEFVPEEKDAYTVVIQKPRKMRPSDEPVLTHSFKVNELGKVLLTVDNPTSKKKKLVYRFNVKP 489          
BLAST of CV887150 vs. ExPASy Swiss-Prot
Match: PATL5_ARATH (Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2)

HSP 1 Score: 285.419 bits (729), Expect = 2.658e-76
Identity = 135/179 (75.42%), Postives = 155/179 (86.59%), Query Frame = -3
Query:  299 KQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFTIDDPATEITVKPATKQNVEIIIYEKCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVDNPTSKKKKLLYRFKVEPF*AC 835
            KQ+FINVPWWYLAF+ +ISPFM+QR+KSK VFAGPS+S ETL KYISPEHVP+QYGGLSVD C+CN +FT DD ATEITVKP TKQ VEII+YEKCT+VWEIRVVGWEVSYGAEFVPE K+ YT+IIQKP K++  +E VV   FKV E+G+ILLTVDNPTS KK L+YRFKV+P  AC
Sbjct:  490 KQIFINVPWWYLAFYRIISPFMSQRSKSKLVFAGPSRSAETLLKYISPEHVPVQYGGLSVDNCECNSDFTHDDIATEITVKPTTKQTVEIIVYEKCTIVWEIRVVGWEVSYGAEFVPENKEGYTVIIQKPRKMTAKNELVVSHSFKVGEVGRILLTVDNPTSTKKMLIYRFKVKPL-AC 667          
BLAST of CV887150 vs. ExPASy Swiss-Prot
Match: PATL1_ARATH (Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 3.744e-46
Identity = 89/175 (50.86%), Postives = 120/175 (68.57%), Query Frame = -3
Query:  314 KQVFINVPWWYLAFHTMISPFMTQ-RTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFTIDDPATEITVKPATKQNVEIIIYEKCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVDNPTSKKKKLLYRFKVE 835
            K++FINVPWWY+ ++      +T  RT+SK V AGPSKS +T+FKYI+PE VP++YGGLS D     P    ++  TE  VKPA    +E+   E CT+ WE+RV+G +VSYGA+F P  +  Y +I+ K  K+  TDEPV+   FKV E GKI++T+DN TSKKKK+LYRFK +
Sbjct:  405 KELFINVPWWYIPYYKTFGSIITSPRTRSKMVLAGPSKSADTIFKYIAPEQVPVKYGGLSKD----TP--LTEETITEAIVKPAANYTIELPASEACTLSWELRVLGADVSYGAQFEPTTEGSYAVIVSKTRKIGSTDEPVITDSFKVGEPGKIVITIDNQTSKKKKVLYRFKTQ 573          
BLAST of CV887150 vs. ExPASy Swiss-Prot
Match: PATL2_ARATH (Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 3.504e-44
Identity = 84/175 (48.00%), Postives = 119/175 (68.00%), Query Frame = -3
Query:  314 KQVFINVPWWYLAFHTMISPFMTQ-RTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLSVDYCDCNPEFTIDDPATEITVKPATKQNVEIIIYEKCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVDNPTSKKKKLLYRFKVE 835
            K++FINVPWWY+ ++      +T  RT+SK V +GPSKS ET+FKY++PE VP++YGGLS D       FT++D  TE  VK  +K  +++   E  T+ WE+RV+G +VSYGA+F P  +  YT+I+ K  K+  TDEPV+   FK  E GK+++T+DN T KKKK+LYR K +
Sbjct:  513 KELFINVPWWYIPYYKTFGSIITSPRTRSKMVLSGPSKSAETIFKYVAPEVVPVKYGGLSKD-----SPFTVEDGVTEAVVKSTSKYTIDLPATEGSTLSWELRVLGADVSYGAQFEPSNEASYTVIVSKNRKVGLTDEPVITDSFKASEAGKVVITIDNQTFKKKKVLYRSKTQ 682          
BLAST of CV887150 vs. ExPASy Swiss-Prot
Match: PATL4_ARATH (Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.290e-38
Identity = 82/176 (46.59%), Postives = 121/176 (68.75%), Query Frame = -3
Query:  314 KQVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGL-SVDYCDCNPEFTIDDPATEITVKPATKQNVEIIIYE-KCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVDNPTSKKKKLLYRFKVE 835
            + +FINVP+W+ A   ++SPF+TQRTKSKFV A P+K  ETL KYI  + +P+QYGG  +VD    + EF+ ++  +E+ VKP + + +EI   E + T+VW+I V+GWEV+Y  EFVP  +  YT+I+QK  K+   + P +   FK  + GKI+LTVDN + KKKK+LYR++ +
Sbjct:  366 RNIFINVPFWFYAMRAVLSPFLTQRTKSKFVVARPAKVRETLLKYIPADELPVQYGGFKTVD----DTEFS-NETVSEVVVKPGSSETIEIPAPETEGTLVWDIAVLGWEVNYKEEFVPTEEGAYTVIVQKVKKMGANEGP-IRNSFKNSQAGKIVLTVDNVSGKKKKVLYRYRTK 535          
BLAST of CV887150 vs. ExPASy Swiss-Prot
Match: PATL6_ARATH (Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.873e-38
Identity = 81/176 (46.02%), Postives = 117/176 (66.48%), Query Frame = -3
Query:  317 QVFINVPWWYLAFHTMISPFMTQRTKSKFVFAGPSKSTETLFKYISPEHVPIQYGGLS--VDYCDCNPEFTIDDPATEITVKPATKQNVEII-IYEKCTVVWEIRVVGWEVSYGAEFVPEAKDKYTIIIQKPTKLSPTDEPVVCQRFKVDELGKILLTVDNPTSKKKKL-LYRFKV 832
            ++FINVPW++   ++M SPF+TQRTKSKFV +    + ETL+K+I PE +P+QYGGLS   D  +  P+     PA+E ++K   K N++I  I    T+ W+I V GW++ Y AEFVP A++ Y I+++KP K+  TDE  VC  F   E GK++L+VDN  S+KKK+  YR+ V
Sbjct:  233 KIFINVPWYFSVIYSMFSPFLTQRTKSKFVMSKEGNAAETLYKFIRPEDIPVQYGGLSRPTDSQNGPPK-----PASEFSIKGGEKVNIQIEGIEGGATITWDIVVGGWDLEYSAEFVPNAEESYAIVVEKPKKMKATDE-AVCNSFTTVEAGKLILSVDNTLSRKKKVAAYRYTV 402          
The following BLAST results are available for this feature:
BLAST of CV887150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PATL3_ARATH4.844e-7876.00Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 S... [more]
PATL5_ARATH2.658e-7675.42Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 S... [more]
PATL1_ARATH3.744e-4650.86Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 S... [more]
PATL2_ARATH3.504e-4448.00Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 S... [more]
PATL4_ARATH1.290e-3846.59Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 S... [more]
PATL6_ARATH2.873e-3846.02Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029D12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T7_D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887150 ID=CV887150; Name=CV887150; organism=Citrus sinensis; type=EST; length=837bp
TACCTTGTTTGAAATACAGGGCCCTAATGTGTTCCAACATATAGATATCA
GTATGGAAATTTAAAATTTACAGAGCAAAACACCCCAACTAAGTGGTACA
CACCCCAAGTCTCGCCTGCTGCCACAATTTCTATGTAAGATCTGGCAAAT
CAACACAAAATTCACGCTCGTGTAGTACTCTCCCCCCAGAGTTGCACCTC
ATTAAAAAGAAACACATGACCAGATACAGACACTTAACCCGAAACATTAG
AGAAAGAAATTAAACATGCATTACAAAGCCTTATGTATGATGAAATCAAC
AAGCTCAGAAGGGTTCAACCTTGAACCTGTAGAGTAATTTCTTCTTCTTT
GATGTTGGGTTGTCAACTGTGAGCAATATTTTACCCAACTCATCAACTTT
GAATCTTTGGCACACCACCGGTTCGTCAGTTGGGGATAACTTTGTAGGCT
TCTGTATAATGATGGTATATTTGTCTTTTGCCTCAGGCACAAATTCAGCT
CCATAGCTCACCTCCCATCCCACAACCCGGATTTCCCAAACAACAGTACA
TTTCTCATAGATTATGATTTCAACATTTTGCTTGGTTGCTGGTTTTACAG
TAATCTCAGTAGCAGGATCATCAATGGTAAATTCCGGGTTGCAATCACAG
TAATCTACACTAAGGCCACCATACTGAATCGGCACATGCTCAGGTGATAT
GTATTTGAAAAGGGTCTCAGTGGATTTTGATGGGCCTGCAAACACGAACT
TGCTCTTGGTCCTCTGGGTCATAAAAGGACTAATCATCGTGTGGAATGCA
AGATACCACCATGGAACATTGATAAACACCTGCTTGG
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