CX043314

Overview
NameCX043314
Unique NameCX043314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13273 contig Csv1_Contig13273:1..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043314 vs. ExPASy Swiss-Prot
Match: CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.591e-16
Identity = 58/164 (35.37%), Postives = 86/164 (52.44%), Query Frame = -1 
Query:  212 STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDADALMKNMRVSIS---------PKSSMEAAKYVEKPAKYVNPKCSPRR---IQQPR 667
            STLNPNAP+F P  FR+VEDFSP+WW L+TTS W+ ++WLS + + +     GGDD                      FS +E +F+E + S  S+  +++  +   D  + +K M ++I+          K S  + KY +K  KY+NP  + RR   I QPR
Sbjct:   10 STLNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFL---GGDD----------------------FSVMEEEFEEMIAS--SDGGSMADTVTEADVASYLK-MLLNIAESTKEKIYRSKVSSCSPKYNQK--KYMNPNFNCRRNHHIYQPR 143
The following BLAST results are available for this feature:
BLAST of CX043314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CID2_ARATH7.591e-1635.37Polyadenylate-binding protein-interacting protein ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_10C05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10C05-F10-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043314 ID=CX043314; Name=CX043314; organism=Citrus sinensis; type=EST; length=754bp
TTTTTTTTAGAACAATTTCTTGTTTCATTTATCCTAAATTGTACATCTTT
TTTACATTTTTTTTTCCCCAATGATTCTTTGTTTCACTGAAATTAAAGAC
GAGAATGAACAAGGAATTATACAGAGTTAAGAGCCTTGCTCTATACAGCA
ACTACAGAAAGCAAAAAACTACAAACTGCAAACAACAGCCATTGCACATT
TTCCCTCTTCAACGGGGTTGCTGGATGCGGCGGGGGCTGCACTTTGGGTT
CACATACTTGGCCGGTTTCTCAACATATTTGGCAGCTTCCATGGAAGATT
TGGGAGATATCGAGACCCTCATATTCTTCATCAGTGCATCTGCATCATTT
GCAGGCAGTGGGGATGAAATGTTTTCCAGTTCACTTTCAAACGACATAAC
AAACTCATCGAATTGAGCTTCTATGCTAGAGAAATTTTCGCCAGCATCAA
GGTCAAACGTATCTGGAAGCAAGTCAGCTACATTGCTGACATCAAATTCA
TCATCTCCACCATTGTCATAAAAGCCATCCTCGTCTTGATGCTGGCTGAG
CCAGTAGTTGTGGTACCATGTGGAGGTCGTGATCAGCTGCCACCATTCGG
GGGAGAAATCCTCCACTTGGCGAAAAGCAGCCGGAATGAAGAGTGGGGCA
TTGGGGTTCAACGTCGACCTTCCTGAAACTAGCGCCATCAAAGTCCAATT
CTCACTTCTGATCTTTGATTTGAGATAAGATATTTTTTTTTTTTTTTTTT
TTTT
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