EL492485

Overview
NameEL492485
Unique NameEL492485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length195
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2225 contig Csv1_Contig2225:294..487. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.283e-26
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            +TIMGPSDSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL
Sbjct:   35 ATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 89          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.676e-26
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            +TIMGPSDSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDIL
Sbjct:   35 ATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDIL 89          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.676e-26
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            +TIMGPS+SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL
Sbjct:   35 ATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 89          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.734e-26
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            +TIMGP+DSPYAGGVFLV+IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL
Sbjct:   35 ATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 89          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.318e-26
Identity = 51/55 (92.73%), Postives = 55/55 (100.00%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            +TIMGP++SPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL
Sbjct:   35 ATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 89          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.318e-26
Identity = 51/55 (92.73%), Postives = 55/55 (100.00%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            +TIMGP+DSP+AGGVFLVTIHFPPDYPFKPPKVAFRTKV+HPNINSNGSICLDIL
Sbjct:   35 ATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDIL 89          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.049e-24
Identity = 48/55 (87.27%), Postives = 53/55 (96.36%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            +TIMGP++SPY+GGVFLV IHFPPDYPFKPPKV FRTKVFHPNINSNG+ICLDIL
Sbjct:   35 ATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDIL 89          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.049e-24
Identity = 48/55 (87.27%), Postives = 54/55 (98.18%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            +TIMGP +SPYAGGVFLV+IHFPPDYPFKPPKV+F+TKV+HPNINSNGSICLDIL
Sbjct:   35 ATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDIL 89          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.864e-23
Identity = 46/55 (83.64%), Postives = 51/55 (92.73%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            +TIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF TK++HPNINSNGSICLDIL
Sbjct:   35 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDIL 89          
BLAST of EL492485 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.608e-23
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 1
Query:   16 STIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL 180
            +TIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL
Sbjct:   35 ATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 89          
The following BLAST results are available for this feature:
BLAST of EL492485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
UBC9_ARATH1.283e-2696.36SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC28_ARATH1.676e-2694.55Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH1.676e-2696.36Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC4_SOLLC3.734e-2694.55Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC8_ARATH8.318e-2692.73Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC30_ARATH8.318e-2692.73Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH2.049e-2487.27Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC11_ARATH2.049e-2487.27Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UB2D4_HUMAN3.864e-2383.64Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UB2D3_RAT8.608e-2381.82Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionC1180 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC1180, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492485 ID=EL492485; Name=EL492485; organism=Citrus sinensis; type=EST; length=195bp
CATGTTCCACTGGCAAGCACAATTATGGGCCCTTCTGATAGCCCATATGC
AGGAGGTGTATTTTTGGTTACCATTCATTTTCCTCCTGATTATCCNTTCA
AGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCCGAACATCAAC
AGCAATGGAAGCATCTGTCTTGATATCCTTACTNCAGGACTCATC
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