FC871911

Overview
NameFC871911
Unique NameFC871911
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length351
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC871911_ssr293 microsatellite FC871911_ssr293:293..308. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig703 contig Csv1_Contig703:149..499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871911 vs. ExPASy Swiss-Prot
Match: HDA8_ARATH (Histone deacetylase 8 OS=Arabidopsis thaliana GN=HDA8 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.009e-20
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 LLIVHEGGYHVTYSAYCLHATLEGVLNLPLALLSDPIAYYPEDEAFSVKVIESIKQYQNDVIPFLK 198
            LL+V EGGYHVTY+AYCLHA LEGVL +P   LSDPIAYYPE+EA +V  +ESIK Y  + +PFL+
Sbjct:  310 LLMVQEGGYHVTYAAYCLHAMLEGVLKIPEPHLSDPIAYYPEEEANAVAAVESIKTYHTEFVPFLR 375
The following BLAST results are available for this feature:
BLAST of FC871911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HDA8_ARATH4.009e-2066.67Histone deacetylase 8 OS=Arabidopsis thaliana GN=H... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK3CE09FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3CE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871911 ID=FC871911; Name=FC871911; organism=Citrus sinensis; type=EST; length=351bp
CTTCTTATTGTCCATGAAGGTGGATATCATGTTACTTACTCAGCCTATTG
TCTTCATGCAACACTAGAAGGTGTCCTTAACCTCCCACTTGCCCTATTGT
CTGATCCCATTGCATATTACCCAGAGGATGAGGCATTTTCTGTAAAAGTT
ATTGAGTCCATTAAACAGTACCAAAATGATGTCATACCATTTTTAAAGGG
ATCTTGATATGGTGGATTTTTTTCTTTTTTCAAACCTCATTTAGAGATTG
TAAAACTATATTCATGTGTATTTTAGTTCTTAATTCACAAAAAAATAAAT
AAATAAATAACAAAGAGTTGATTGTAGGAATAAAAAAAAAAAAAAAAAAA
A
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