CV887120

Overview
NameCV887120
Unique NameCV887120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RK15_ARATH (50S ribosomal protein L15, chloroplastic OS=Arabidopsis thaliana GN=RPL15 PE=1 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 1.404e-79
Identity = 147/179 (82.12%), Postives = 158/179 (88.27%), Query Frame = -3
Query:  267 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLARAEEYFAKKR 803
            +NLGPQPGS         GI+AGQG SCGFGMRGQKSRSGPG+ +GFEGGQ  LYRR+PKLRGIAGGM +GLPKY+PVN+KDIE AGF EGDEVSLETLK+KGLINPSGRERKLPLKILG GELS KL FKARAFST AKEKLEA+GCTLTVLPGRKKWVKPSVAKN ARA+EYFAKKR
Sbjct:   84 DNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLPKLRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVSLETLKQKGLINPSGRERKLPLKILGTGELSMKLTFKARAFSTQAKEKLEASGCTLTVLPGRKKWVKPSVAKNQARADEYFAKKR 262          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RK15_PEA (50S ribosomal protein L15, chloroplastic (Fragment) OS=Pisum sativum GN=RPL15 PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.028e-78
Identity = 148/179 (82.68%), Postives = 156/179 (87.15%), Query Frame = -3
Query:  267 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVLPGRKKWVKPSVAKNLARAEEYFAKKR 803
            +NLGPQPGS         GIAAGQG SCGFGMRGQKSRSGPG+ +GFEGGQMPLYRR+PKLRGIAGGMHAGLPKYV VNL DIE AGF +G+EVSLETLK K +INPSGRERKLPLKIL DGELSKKL  KA AFSTSAKEKLE AGC+L VLPGRKKWVKPSVAKNLARAEEYFAKKR
Sbjct:   69 DNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVLPGRKKWVKPSVAKNLARAEEYFAKKR 247          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_SYNP6 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplO PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.333e-29
Identity = 78/156 (50.00%), Postives = 99/156 (63.46%), Query Frame = -3
Query:  345 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 803
            +NL PQPG+         GIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++     +   PLKILGDGELS  L+  A AF+ +A++K+EAAG ++ ++
Sbjct:    4 DNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVT----QNDGPLKILGDGELSVSLSVSAAAFTATAQQKIEAAGGSIALV 147          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_SYNE7 (50S ribosomal protein L15 OS=Synechococcus elongatus (strain PCC 7942) GN=rplO PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.333e-29
Identity = 78/156 (50.00%), Postives = 99/156 (63.46%), Query Frame = -3
Query:  345 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPK---YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 803
            +NL PQPG+         GIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L     Y  VN+  +  AG   G EV+LE+L   G++     +   PLKILGDGELS  L+  A AF+ +A++K+EAAG ++ ++
Sbjct:    4 DNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFPLINRKFYTVVNVGAL--AGLAAGTEVTLESLMAVGIVT----QNDGPLKILGDGELSVSLSVSAAAFTATAQQKIEAAGGSIALV 147          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_MICAN (50S ribosomal protein L15 OS=Microcystis aeruginosa (strain NIES-843) GN=rplO PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.629e-27
Identity = 72/146 (49.32%), Postives = 90/146 (61.64%), Query Frame = -3
Query:  366 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAA 803
            + + PQPGS         G++AGQG SCG GMRGQKSRSG G R GFEGGQMPLYRR+PKL+           +Y  VNL+ +  A      EV+LE+L K  ++  +      PLK+LGDGE++  L  KA AFS SAKEK+ AA
Sbjct:    4 HEIAPQPGSTKRRRRVGRGVSAGQGASCGLGMRGQKSRSGTGTRPGFEGGQMPLYRRVPKLKHFP---LVNPRQYTIVNLRKL--ASLPANTEVTLESLLKAKILTSNDG----PLKVLGDGEITVPLKVKAAAFSNSAKEKITAA 140          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_CYAP7 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 7424) GN=rplO PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.629e-27
Identity = 75/152 (49.34%), Postives = 92/152 (60.53%), Query Frame = -3
Query:  348 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTV 803
            + L PQ G+         GI+AGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRRIPKL+           +Y  +N+  +  A      EV+LETL   GLI  +      PLKILG+GEL+  L  KA AF+  A+EK+EAAG +  V
Sbjct:    4 HELAPQKGATKRRRRVGRGISAGQGASCGFGMRGQKSRSGTGTKPGFEGGQMPLYRRIPKLKHFP---LVNRRQYTIINVGQL--ASLDPNSEVTLETLMDAGLITTNDG----PLKILGNGELTIPLTIKAAAFTKGAQEKIEAAGGSCVV 146          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_CYAP8 (50S ribosomal protein L15 OS=Cyanothece sp. (strain PCC 8801) GN=rplO PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.779e-27
Identity = 77/152 (50.66%), Postives = 96/152 (63.16%), Query Frame = -3
Query:  345 PQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGL--PK-YVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 791
            P+ GS         GI+AGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRRIPKL+      H  L  PK Y  +N+  +E+       EV+LE+L ++G+I  +      PLK+LGDG L+K L  KA AFS SA+EK+ A G +  VL
Sbjct:    8 PKEGSTKRRRRVGRGISAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRRIPKLK------HFPLVNPKHYTIINVGKLES--LEPNTEVTLESLMEQGIITTNDG----PLKVLGDGTLTKALTVKAAAFSKSAQEKIAATGGSWEVL 147          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_SYNS3 (50S ribosomal protein L15 OS=Synechococcus sp. (strain CC9311) GN=rplO PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.740e-27
Identity = 74/153 (48.37%), Postives = 93/153 (60.78%), Query Frame = -3
Query:  345 NLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLE-GDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAGCTLTVL 800
            +L P  G+         GIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+      H  L       + ++ A   ++ G  V+L++L K G++       K PLKILG+GEL  KL  +A AF+ SA+ K+EAAG T  VL
Sbjct:    7 SLKPNKGARRRKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLK------HFTLVNPKSFTVLNVSALNEIKAGSTVNLDSLVKDGIVT----SPKSPLKILGNGELKAKLTVQAAAFTASARAKIEAAGGTCEVL 149          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_SYNP2 (50S ribosomal protein L15 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplO PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.191e-27
Identity = 73/147 (49.66%), Postives = 86/147 (58.50%), Query Frame = -3
Query:  363 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 803
            +NL P+ GS         GIAAGQG SCGFGMRGQKSRSG G + GFEGGQMPLYRR+PKL+                 L D+ A       EV+LE+L   G++  +      PLK+LGDGELS  L   A AFS  AK K+EAAG
Sbjct:    4 SNLSPKAGSKKRRRRVGRGIAAGQGASCGFGMRGQKSRSGTGTKAGFEGGQMPLYRRVPKLKHFTIVNPKNFTIVNVGQLTDLPA-----NTEVTLESLMAAGIVTTNDG----PLKVLGDGELSVALKVTAAAFSNGAKAKIEAAG 141          
BLAST of CV887120 vs. ExPASy Swiss-Prot
Match: RL15_PROM2 (50S ribosomal protein L15 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplO PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.086e-27
Identity = 72/147 (48.98%), Postives = 92/147 (62.59%), Query Frame = -3
Query:  363 NNLGPQPGSXXXXXXXXXGIAAGQGNSCGFGMRGQKSRSGPGVRKGFEGGQMPLYRRIPKLRGIAGGMHAGLPKYVPVNLKDIEAAGFLEGDEVSLETLKKKGLINPSGRERKLPLKILGDGELSKKLNFKARAFSTSAKEKLEAAG 803
            N L    GS         GIAAGQG SCGFGMRGQKSRSG   R GFEGGQMPLYRR+PKL+            +  +NL+ +    F + D V++++L KKGLI     + K PLKILG+G+++ KL  +A AF+  AK+K+EAAG
Sbjct:    6 NTLKSNSGSRKKKLRKGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRVPKLKHFE---IINQKNFSIINLEKLN--DFKDNDTVNIDSLVKKGLI----FKPKFPLKILGNGKINVKLKVQAHAFTKVAKQKIEAAG 143          
The following BLAST results are available for this feature:
BLAST of CV887120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK15_ARATH1.404e-7982.1250S ribosomal protein L15, chloroplastic OS=Arabid... [more]
RK15_PEA2.028e-7882.6850S ribosomal protein L15, chloroplastic (Fragment... [more]
RL15_SYNP61.333e-2950.0050S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNE71.333e-2950.0050S ribosomal protein L15 OS=Synechococcus elongat... [more]
RL15_MICAN1.629e-2749.3250S ribosomal protein L15 OS=Microcystis aeruginos... [more]
RL15_CYAP71.629e-2749.3450S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]
RL15_CYAP82.779e-2750.6650S ribosomal protein L15 OS=Cyanothece sp. (strai... [more]
RL15_SYNS34.740e-2748.3750S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_SYNP26.191e-2749.6650S ribosomal protein L15 OS=Synechococcus sp. (st... [more]
RL15_PROM28.086e-2748.9850S ribosomal protein L15 OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029C05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T7_C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887120 ID=CV887120; Name=CV887120; organism=Citrus sinensis; type=EST; length=805bp
TAATAACTGAGATTTGGCTTTCCAGCTAAGTAACATGAGAATCAGAACAT
TGAGAGTTTAGCTGAATTTTTAAAAGGGAGGGGATACAAAGAAGAGACAA
ATTCCAGAAATTACAGCTATAGACATCCTCCTCTCATTTCGCTACCCCGA
AAACCTAAAACCAGAGAAAAAGAATCGAAGACAATTCAATGGCTCTACTT
AGTTACAGTGAGTGAAAAAAACCAAGTGGTTCAAGCTGAAGTTGAATCGG
ATGCAGCTGCAGCAGCTCTCTTCTTGGCGAAGTATTCTTCAGCTCGTGCA
AGGTTCTTAGCTACTGATGGTTTCACCCACTTCTTTCGGCCAGGTAAGAC
AGTGAGGGTACAGCCTGCAGCTTCAAGCTTCTCCTTTGCTGATGTAGAGA
AGGCACGAGCCTTGAAGTTCAGCTTCTTGCTTAATTCTCCATCACCAAGA
ATCTTTAAAGGCAGTTTCCTTTCTCTTCCTGAGGGATTGATCAAGCCCTT
CTTCTTCAAAGTCTCTAGTGAGACTTCATCCCCCTCTAGAAAACCAGCTG
CTTCTATGTCTTTCAAGTTAACAGGGACATACTTAGGTAACCCAGCATGC
ATACCTCCGGCAATCCCACGGAGCTTAGGAATTCGACGATAAAGAGGCAT
TTGACCACCTTCAAAACCCTTTCTAACGCCAGGACCAGACCTCGATTTCT
GACCTCTCATTCCAAACCCACAGCTGTTACCTTGCCCAGCTGCTATTCCT
CTCCCCTTTCTCTTCCCTCTCTTTCTCGAACCCGGTTGTGGGCCCAGGTT
ATTTA
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