CV887118

Overview
NameCV887118
Unique NameCV887118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV887118 vs. ExPASy Swiss-Prot
Match: PP322_ARATH (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.768e-30
Identity = 69/164 (42.07%), Postives = 95/164 (57.93%), Query Frame = 2 
Query:  335 LVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSXXXXXXXXXXXQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLERY 826
            LV  L  L N KE VYG L+ WVAWE  FP+ +            QWHRV+Q+ KWMLSKGQG+TMGT   L+ A DMD RA+EA   W   +     S+P +L   MIA+Y  +++ +++I++F  +E     P E S  +RVA A+  L   E ++ +L RY
Sbjct:  101 LVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADMEELKVSPDEDS-ARRVARAFRELNQEENRKLILRRY 263
[Close]
BLAST of CV887118 vs. ExPASy Swiss-Prot
Match: PP332_ARATH (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.638e-25
Identity = 58/164 (35.37%), Postives = 94/164 (57.32%), Query Frame = 2 
Query:  335 LVNTLLDLKNSKEDVYGTLDAWVAWEQNFPVGSXXXXXXXXXXXQQWHRVVQVIKWMLSKGQGSTMGTCGQLIRALDMDHRAEEAHKFWEKRIGIDLHSVPWQLCKSMIAIYYRNNMLERLIKLFKGLEAFDRKPPEKSIVQRVADAYEVLGLLEEKERVLERY 826
            ++  +  L N KE+VYG LD+++AWE  FP+             ++W +++QV KWMLSKGQG TMGT   L+ AL  D+R +EA + W K     L   P +    MI+IYY+ +M ++L ++F  +E    K P  +IV  V   +  L + ++ E+++++Y
Sbjct:   61 MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQKLFEVFADMEELGVK-PNVAIVSMVGKVFVKLEMKDKYEKLMKKY 223
The following BLAST results are available for this feature:
BLAST of CV887118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP322_ARATH3.768e-3042.07Pentatricopeptide repeat-containing protein At4g18... [more]
PP332_ARATH1.638e-2535.37Pentatricopeptide repeat-containing protein At4g21... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029C04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T7_C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887118 ID=CV887118; Name=CV887118; organism=Citrus sinensis; type=EST; length=841bp
CGCTACAGCTGCTCTGGTCATCGACGGCCGCGGATTTTGCCGCGAATTTT
TTATTTATTCGATTTTTAAACTACGAATAAGTTTGAAGCTGCAACTGCAA
ATGTGGAGGTCACCTGCAACATCTTACCTGGTTGGCCGAACCCTGAATTC
CATTTACAAATCGGTGGAAAAAATTCAAATACCTAATCAAATCATTGGAA
AAGCTATGTCTATGTCATCATTAGAGGGTCAACGCACCAACCAATCCGTA
GATCAGTATCCAGAGAGAAATGCTGCAAGTACACGGAATTTTCGAATTGG
GGAGTATGTCCCGAGAAAGGATAAGATTAATTTCCTTGTAAACACTCTTC
TTGACCTCAAGAACAGTAAAGAAGATGTTTATGGCACTCTTGATGCTTGG
GTTGCATGGGAGCAAAACTTTCCTGTTGGATCACTTAAGAAGGCATTGCT
TGCTCTTGAGAAGGAACAACAGTGGCACAGAGTAGTTCAGGTAATCAAAT
GGATGTTAAGCAAGGGGCAGGGATCTACAATGGGCACATGTGGACAATTA
ATACGGGCTTTAGATATGGACCACAGAGCAGAAGAAGCACACAAGTTTTG
GGAGAAGAGAATTGGTATAGACCTCCACTCTGTCCCTTGGCAATTATGCA
AAAGCATGATCGCTATTTATTATCGAAACAATATGCTGGAGAGGCTCATA
AAGCTTTTCAAGGGTCTTGAAGCTTTTGATCGTAAACCTCCAGAGAAATC
AATAGTGCAGAGAGTTGCAGATGCATACGAAGTGTTGGGCTTATTAGAAG
AGAAAGAAAGGGTCTTGGAGAGGTACAAGGATCTCTTCACT
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