CV887103

Overview
NameCV887103
Unique NameCV887103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGS2_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Vicia faba GN=AGPP PE=2 SV=1)

HSP 1 Score: 415.616 bits (1067), Expect = 1.748e-115
Identity = 206/233 (88.41%), Postives = 219/233 (93.99%), Query Frame = 3
Query:  156 VVKRLAFSSSQLSGDKIFSKAVTGDRRRERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEFS 854
            + + L+F+SS LSGDKIF+ +    R   R P +VSP+AVSDSKNSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN+GGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE+LVLAGDHLYRMDYERFIQAHRE+DADITVAALPMDE RATAFGLMKIDE+GRIIEFS
Sbjct:   25 IARNLSFTSSHLSGDKIFTLSGRTRRTSGRNPFIVSPKAVSDSKNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNLGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEYLVLAGDHLYRMDYERFIQAHRESDADITVAALPMDEARATAFGLMKIDEEGRIIEFS 257          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGS_BETVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic (Fragment) OS=Beta vulgaris GN=AGPB1 PE=2 SV=1)

HSP 1 Score: 415.231 bits (1066), Expect = 2.283e-115
Identity = 210/232 (90.52%), Postives = 218/232 (93.97%), Query Frame = 3
Query:  168 LAFSSSQLSGDKIFSKAVTGDRR---RERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEFS 854
            LAFSSS LSGDKI + +    R      R PIVVSP+AVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE+L+LAGDHLYRMDYERF+QAHRETDADITVAALPMDEKRATAFGLMKIDE+GRIIEF+
Sbjct:   15 LAFSSSSLSGDKIQTTSFLNRRYCRISSRAPIVVSPKAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYERFVQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFA 246          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGS_BRANA (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Brassica napus GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 412.149 bits (1058), Expect = 1.933e-114
Identity = 217/272 (79.78%), Postives = 231/272 (84.93%), Query Frame = 3
Query:   60 MASMASIGSLKVXXXXXXXXXXXXXXXXXXXXVVKRLAFSSSQLSGDK-------IFSKAVTGDRRRERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEFS 854
            MA+MA+IGSLKV                      K L+FSSS L+G+K       I S    G+ RR   P +VSP+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYE+FIQAHRETDADITVAALPMDEKRATAFGLMKID++GRIIEF+
Sbjct:    1 MATMAAIGSLKVPSSSSNHTRRLSSSSQR-----KTLSFSSSSLTGEKLNPTQEIIISNLPRGNERRT--PSIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDDEGRIIEFA 265          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGS_SOLTU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 403.29 bits (1035), Expect = 8.977e-112
Identity = 204/235 (86.81%), Postives = 219/235 (93.19%), Query Frame = 3
Query:  162 KRLAFSSSQLSGDKIF---SKAVTGDRRRERR-PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEFS 854
            + L+FSSS L+GDK+    S    G R   RR P++VSP+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENP+WFQGTADAVRQYLWLFEEH VLE+L+LAGDHLYRMDYE+FIQAHRETDADITVAALPMDEKRATAFGLMKIDE+GRIIEF+
Sbjct:   32 RNLSFSSSHLAGDKLMPVSSLRSQGVRFNVRRSPMIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFA 266          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGS_SOLLC (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 1.172e-111
Identity = 204/235 (86.81%), Postives = 219/235 (93.19%), Query Frame = 3
Query:  162 KRLAFSSSQLSGDKIF---SKAVTGDRRRERR-PIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEFS 854
            + L+FSSS L+GDK+    S    G R   RR P++VSP+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMG YKNEGFVEVLAAQQSPENP+WFQGTADAVRQYLWLFEEHNVLE+L+LAGDHLYRMDYE+FIQAHRETDADITVAALPMDEKRATAFGLMKIDE+GRIIEF+
Sbjct:   32 RNLSFSSSHLAGDKLMPVSSLRSQGVRFNVRRSPLIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGEYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFA 266          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGS_ARATH (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=2 SV=2)

HSP 1 Score: 400.979 bits (1029), Expect = 4.455e-111
Identity = 210/269 (78.07%), Postives = 226/269 (84.01%), Query Frame = 3
Query:   60 MASMASIGSLKVXXXXXXXXXXXXXXXXXXXXVVKRLAFSSSQLSGDKIFSKAVTGDRRRE----RRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEFS 854
            MAS+++IG LKV                      + L+FSSS  S D   S   T  R  +    R PI+VSP+AVSDS+NSQTCLDP+AS SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE+L+LAGDHLYRMDYE+FIQAHRETDADITVAALPMDE+RATAFGLMKIDE+GRIIEF+
Sbjct:    1 MASVSAIGVLKVPPASTSNSTGKATEAVP----TRTLSFSSSVTSSDDKISLKSTVSRLCKSVVRRNPIIVSPKAVSDSQNSQTCLDPDASSSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEQRATAFGLMKIDEEGRIIEFA 265          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGS1_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic OS=Vicia faba GN=AGPC PE=2 SV=1)

HSP 1 Score: 398.282 bits (1022), Expect = 2.888e-110
Identity = 201/234 (85.90%), Postives = 219/234 (93.59%), Query Frame = 3
Query:  162 KRLAFSSS-QLSGDKIFSKAVTGDRRRE--RRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEFS 854
            K L+FSSS QLSG+KI + +  G  R     + + ++P+AVSDS+NSQTCLDP+ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASN+GGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLE+L+LAGDHLYRMDYE+FIQAHRE+DADITVAALPMDEKRATAFGLMKIDE+GRIIEF+
Sbjct:   20 KNLSFSSSSQLSGNKILTVSGNGAPRGRCTLKHVFLTPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNLGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEYLILAGDHLYRMDYEKFIQAHRESDADITVAALPMDEKRATAFGLMKIDEEGRIIEFA 253          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGS_ORYSJ (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=AGPS PE=2 SV=4)

HSP 1 Score: 390.193 bits (1001), Expect = 7.864e-108
Identity = 189/215 (87.91%), Postives = 205/215 (95.35%), Query Frame = 3
Query:  210 SKAVTGDRRRERRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEFS 854
            S + +    R RRP+V SP+AVSDSK+SQTCLDP+AS SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY +N+GGYKNEGFVEVLAAQQSP+NPNWFQGTADAVRQYLWLFEEHNV+EFL+LAGDHLYRMDYE+FIQAHRETD+DITVAALPMDEKRATAFGLMKIDE+GRI+EF+
Sbjct:   45 SSSSSSSAGRRRRPLVFSPRAVSDSKSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSPDNPNWFQGTADAVRQYLWLFEEHNVMEFLILAGDHLYRMDYEKFIQAHRETDSDITVAALPMDEKRATAFGLMKIDEEGRIVEFA 259          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGS_HORVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 9.613e-106
Identity = 186/204 (91.18%), Postives = 199/204 (97.55%), Query Frame = 3
Query:  243 RRPIVVSPQAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEFS 854
            RRP   SP+AVSDSK+SQTCLDP+AS SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY SN+GGYKNEGFVEVLAAQQSP+NP+WFQGTADAVRQYLWLFEEHNV+E+L+LAGDHLYRMDYE+FIQAHRETDADITVAALPMDE+RATAFGLMKIDE+GRIIEF+
Sbjct:   55 RRPFFFSPRAVSDSKSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGSNIGGYKNEGFVEVLAAQQSPDNPDWFQGTADAVRQYLWLFEEHNVMEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEERATAFGLMKIDEEGRIIEFA 258          
BLAST of CV887103 vs. ExPASy Swiss-Prot
Match: GLGS_WHEAT (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-S PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 2.221e-94
Identity = 168/191 (87.96%), Postives = 180/191 (94.24%), Query Frame = 3
Query:  282 SKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEHNVLEFLVLAGDHLYRMDYERFIQAHRETDADITVAALPMDEKRATAFGLMKIDEKGRIIEFS 854
            S +    L+P    SVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYV TQFNSASLNRHLSRAY SN+GGYKNEGFVEVLAAQQSP+NP+WFQGTADAVRQYLWLFEEHNV+E+L+LAGDHLYRMDYE+FIQAHRETDADITVAALPMDE+RATAFGLMKIDE+GRIIEF+
Sbjct:   28 SSSKHADLNPHVDDSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVRTQFNSASLNRHLSRAYGSNIGGYKNEGFVEVLAAQQSPDNPDWFQGTADAVRQYLWLFEEHNVMEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEERATAFGLMKIDEEGRIIEFA 218          
The following BLAST results are available for this feature:
BLAST of CV887103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
GLGS2_VICFA1.748e-11588.41Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_BETVU2.283e-11590.52Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_BRANA1.933e-11479.78Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLTU8.977e-11286.81Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLLC1.172e-11186.81Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ARATH4.455e-11178.07Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS1_VICFA2.888e-11085.90Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_ORYSJ7.864e-10887.91Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_HORVU9.613e-10691.18Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_WHEAT2.221e-9487.96Glucose-1-phosphate adenylyltransferase small subu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029B07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887103 ID=CV887103; Name=CV887103; organism=Citrus sinensis; type=EST; length=854bp
CTCACTCAGGCTCAGCTCGCTTAACGATTACTGTTAACGTTAACAGATTG
TACCGATTAATGGCGAGTATGGCGTCGATCGGATCGCTCAAAGTTCCGTC
ATCTCCGTCAACTGCAGCAACGTCGTCTAACTCCAACAATCACAGCCGCA
GGAGTGTGGTTAAACGACTGGCGTTCTCGTCGTCTCAGCTCTCCGGTGAC
AAGATTTTTTCTAAAGCTGTCACCGGTGATCGGCGAAGGGAGAGGCGTCC
GATCGTTGTGTCTCCTCAAGCGGTGTCGGATTCGAAAAATTCGCAGACTT
GCCTTGATCCTGAAGCCAGTCGAAGTGTTTTGGGGATTATACTTGGAGGT
GGAGCAGGGACTCGCTTGTATCCACTTACGAAGAAGAGGGCAAAGCCTGC
TGTTCCATTGGGAGCTAATTACAGGCTGATTGATATTCCTGTGAGCAATT
GTTTGAATAGTAACATTTCAAAGATCTATGTTCTCACTCAGTTCAATTCT
GCGTCCCTGAATCGTCACCTATCGAGGGCGTATGCTAGCAACATGGGTGG
TTACAAGAACGAAGGATTTGTTGAAGTTCTTGCTGCACAGCAGAGTCCAG
AGAATCCCAATTGGTTTCAGGGTACAGCTGATGCTGTGAGGCAGTATTTG
TGGCTGTTTGAGGAGCACAATGTTCTGGAATTTCTCGTTCTTGCTGGTGA
TCATTTGTACCGAATGGACTATGAGAGATTTATTCAGGCACACAGAGAAA
CTGATGCGGATATCACAGTAGCTGCGCTGCCAATGGATGAAAAACGGGCT
ACTGCTTTTGGTCTGATGAAGATCGATGAAAAGGGACGCATAATTGAATT
TTCT
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