CV887088

Overview
NameCV887088
Unique NameCV887088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV887088 vs. ExPASy Swiss-Prot
Match: ATP7_ARATH (Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.279e-54
Identity = 106/142 (74.65%), Postives = 124/142 (87.32%), Query Frame = 2 
Query:   14 ESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALDKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 439
            ESQRI + I+T T  IPDAR YLL L+EIR RRGL DE GAEAMM +AL+KVEK+IKKPL+R+DKKGM LL AEF+K NKKLGIRKEDLPKYEE LEL +AKAQL+ELK DA+EAME+QKK+EEF+DEEM +VKSLD+RNF+
Sbjct:   99 ESQRIKHDIDTETQDIPDARAYLLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKLGIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNFI 240
The following BLAST results are available for this feature:
BLAST of CV887088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP7_ARATH7.279e-5474.65Probable ATP synthase 24 kDa subunit, mitochondria... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029A11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T7_A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887088 ID=CV887088; Name=CV887088; organism=Citrus sinensis; type=EST; length=769bp
CAGACTTGTTCTCGAATCCCAACGAATAGCGTATACCATTGAAACACGAA
CAGCAGGAATTCCAGATGCTCGAACATATTTGTTGACGCTCAAGGAAATA
AGGGAGAGGAGAGGTCTCATTGATGAGCATGGTGCTGAGGCTATGATGAT
GGATGCATTGGATAAAGTTGAAAAAGAAATTAAAAAGCCTCTTATGAGGA
ATGATAAGAAGGGGATGGCTCTTCTTACAGCTGAGTTTGACAAGATTAAT
AAGAAGCTTGGGATCCGAAAGGAGGATCTACCAAAGTATGAAGAACAGTT
GGAACTCAAAATTGCCAAAGCACAGTTGGAAGAATTGAAGAAGGATGCTC
TTGAGGCCATGGAAACACAAAAGAAGAGAGAGGAATTCAAGGATGAAGAA
ATGGTCGAAGTGAAGTCCTTGGATGTCAGAAACTTCCTTTGAGTCTCTGC
ATTTACTTTTTACGGTTTTTGAGCACAATGGAAATCAGCAACTTGGAATG
TGGAAAATACCATCATTGCTCTCGATTTTAAGAATAAGAGACCATGAGAG
AACTGGAATTCCGTTTATCACTGTTTGTGCAATGAAATCGCACATTCGGC
ACCTTTCATCCTCTGTGTTATTAGCCAGTTTTAATGTATTTAATGGATCG
TATTCCCATTGCGCTTTTCCCCAAACGAGCAAAAAATGGACGGATTGAGT
TTCTAATAACCCTGGAAGATAAGTATTTGCTTGCCACATTGAGTTTCTAA
TAAAAGAGGTTACTTGCCT
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