CV887083

Overview
NameCV887083
Unique NameCV887083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV887083 vs. ExPASy Swiss-Prot
Match: RGAP1_ARATH (Uncharacterized Rho GTPase-activating protein At5g61530 OS=Arabidopsis thaliana GN=At5g61530 PE=1 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 4.911e-66
Identity = 127/175 (72.57%), Postives = 146/175 (83.43%), Query Frame = -1 
Query:  398 NPVDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRS--SSKNMEPATPHGEWDMLADESEETDASSAIPLDDGMPIDFGAIEVVQCLMEQHNAIFTDANETVWR 916
            NPVDVAAL KYYLASLP PLTTFELY+EIK ARSSIH MR +L+KLSNVN+ TLE++TALLLRVSQKSLLNKMD+ SLAMEMAPVIMW+++ +PE YR+YW   SRS   S + E ATP   WD+L+DE E  DASS+IPLDD   +DFGA+EVVQCL+E HNAIFTDA ETVWR
Sbjct:  205 NPVDVAALLKYYLASLPTPLTTFELYNEIKDARSSIHRMRQSLQKLSNVNYNTLEFITALLLRVSQKSLLNKMDSHSLAMEMAPVIMWREDNRPESYREYWRRPSRSPKKSNDFETATP---WDLLSDEGEGPDASSSIPLDDIARVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376
[Close]
BLAST of CV887083 vs. ExPASy Swiss-Prot
Match: RG92B_DROME (Rho GTPase-activating protein 92B OS=Drosophila melanogaster GN=RhoGAP92B PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.897e-11
Identity = 44/129 (34.11%), Postives = 67/129 (51.94%), Query Frame = -1 
Query:  551 NPVDVAALAKYYLASLPEPLTTFELY-DEIKGARSSIHAMRNT-----LKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQK-ERKPEFYRQYWNHASRSSSKNMEPATPHGEWD 916
            +P  + ++ K YL  LPEPL T+ LY D I+ A     A R T     L KL   N+  L Y+T  L  V Q+S LNKM +++LA+ M+P ++W + ++       Y    + SS+ N+       +WD
Sbjct:  317 DPHVIGSILKLYLRELPEPLLTYNLYKDFIRIAERHSEAERKTEIKAILTKLPKENYANLRYLTRFLSIVQQRSALNKMSSQNLAIVMSPNMLWPRIDKSSNAPADYIGQVNSSSAANIIVELLISQWD 445
The following BLAST results are available for this feature:
BLAST of CV887083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RGAP1_ARATH4.911e-6672.57Uncharacterized Rho GTPase-activating protein At5g... [more]
RG92B_DROME5.897e-1134.11Rho GTPase-activating protein 92B OS=Drosophila me... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_029A08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T7_A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887083 ID=CV887083; Name=CV887083; organism=Citrus sinensis; type=EST; length=916bp
GCCCCAATTTTCTGTATATATCATCGTCACAATGGATAAGCCTTTCTATA
ATTTCTGAAGCAACAATCGAAAATCACCCAATTTTCTAGAAAGCAAACCG
AGTGAAAATTACAATACTTATTTGCACCAAGCAACAGCTTCTGTCCCAAA
AACAACAAATATTTGACAACCAAAAATATCTAAACTATAAATAATTGTCA
ATAAGATACTCTCTAATCACTAAAATTTACAAATCAATACCCCAGAACCC
TCCAACGTCTTTCAAGAACACAATATCGGCAGCTACTGCACAGGCGGCAC
CTCAACTAAATTTAGAAACCAATCGTGAGATATTGGTTACTATGTCAAGC
TTCATGAATTTGCCGTAGCATCGGAAATCACACAGAATGGTAAGTCACCT
CCATACAGTCTCATTTGCATCTGTGAAAATCGCGTTGTGCTGTTCCATTA
GGCATTGAACAACCTCGATAGCACCAAAGTCAATTGGCATACCATCATCC
AAAGGAATGGCAGACGAGGCATCCGTTTCTTCACTCTCATCAGCAAGCAT
GTCCCATTCACCATGAGGAGTTGCTGGTTCCATGTTCTTCGAAGAGCTTC
TGGATGCATGATTCCAATATTGCCGATAAAACTCTGGTTTTCGCTCCTTC
TGCCACATAATAACAGGGGCCATTTCCATGGCAAGACTTCTAGCATCCAT
CTTGTTAAGAAGTGACTTCTGGCTAACACGGAGCAAAAGTGCAGTAACAT
ATTCCAGTGTCATGAAGTTCACATTGGAAAGCTTCTTAAGTGTGTTTCTC
ATTGCATGTATGCTAGAACGGGCACCTTTTATCTCATCATATAGCTCAAA
TGTTGTCAGGGGCTCAGGAAGACTAGCAAGGTAGTACTTGGCTAGAGCGG
CAACATCAACTGGATT
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