CV887082

Overview
NameCV887082
Unique NameCV887082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV887082 vs. ExPASy Swiss-Prot
Match: RGAP1_ARATH (Uncharacterized Rho GTPase-activating protein At5g61530 OS=Arabidopsis thaliana GN=At5g61530 PE=1 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 3.009e-104
Identity = 143/190 (75.26%), Postives = 166/190 (87.37%), Query Frame = 2 
Query:    2 ISPPWQEKASEFFSSSGSKLREAGQS----VGEVAKDAKGNAADVAERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLSSQFLFKAEGDKKVIQHLVSMYNQ 559
            IS  WQE+ S FFSSSG+KLREAGQ+    VGEVAKDAK N ADVAERVGS  KSRWA+LQ+P+T+HAVQE LI+AAA TG F+R+G +ETK+KV+VGKIKVEEAAKKTAQKSKTILTDIERWQKGVAS+DVFGV IE+TVQRQ+  +P+P ILVKCADYL+L+GL+S  LFKAEGD+K+IQ LVS YNQ
Sbjct:    5 ISQQWQERTSGFFSSSGTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSRWAILQQPATRHAVQEHLITAAATTGTFVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASSDVFGVAIEITVQRQESSRPIPLILVKCADYLILTGLNSPNLFKAEGDRKLIQQLVSAYNQ 194

HSP 2 Score: 120.553 bits (301), Expect = 3.009e-104
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:  640 DPNASLPEGVNPVDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLR 858
            DP AS+PEGVNPVDVAAL KYYLASLP PLTTFELY+EIK ARSSIH MR +L+KLSNVN+ TLE++TALLLR
Sbjct:  195 DPRASIPEGVNPVDVAALLKYYLASLPTPLTTFELYNEIKDARSSIHRMRQSLQKLSNVNYNTLEFITALLLR 267
The following BLAST results are available for this feature:
BLAST of CV887082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RGAP1_ARATH3.009e-10475.26Uncharacterized Rho GTPase-activating protein At5g... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_029A08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887082 ID=CV887082; Name=CV887082; organism=Citrus sinensis; type=EST; length=858bp
CATCTCTCCGCCATGGCAGGAGAAGGCTAGTGAGTTCTTTTCTTCCTCAG
GGTCGAAGCTTAGAGAAGCTGGACAATCAGTAGGAGAAGTTGCGAAGGAT
GCAAAAGGTAACGCGGCTGATGTGGCGGAACGTGTTGGCTCAGCTGTCAA
AAGTCGATGGGCTCTTCTTCAGGAGCCATCAACGAAACATGCTGTGCAGG
AACGTTTGATATCTGCTGCTGCTATAACTGGGATGTTTTTGAGGAGGGGA
TTTTCAGAGACAAAGGACAAGGTTGCCGTTGGGAAGATAAAAGTTGAAGA
GGCTGCAAAAAAGACTGCACAAAAAAGTAAGACTATTTTGACTGATATTG
AACGATGGCAGAAGGGAGTTGCAAGCACTGATGTATTTGGAGTCCCAATT
GAGGTTACTGTACAACGACAACAATATGGCAAACCTGTTCCACATATATT
GGTCAAATGTGCAGATTACCTCGTATTATCAGGACTAAGCTCACAGTTCT
TGTTCAAAGCTGAGGGAGATAAGAAGGTCATTCAGCATTTGGTTTCTATG
TACAATCAAGGTATCTCAGGCACTTTTTTCTTGGATTTTACTGCTTCTGA
ATAACATTATAAATTGCTATCTATCTCTTGTGTATTTCAGATCCCAATGC
ATCACTGCCAGAGGGTGTGAATCCAGTTGATGTTGCCGCTCTAGCCAAGT
ACTACCTTGCTAGTCTTCCTGAGCCCCTGACAACATTTGAGCTATATGAT
GAGATAAAAGGTGCCCGTTCTAGCATACATGCAATGAGAAACACACTTAA
GAAGCTTTCCAATGTGAACTTCATGACACTGGAATATGTTACTGCACTTT
TGCTCCGT
back to top