CV887070

Overview
NameCV887070
Unique NameCV887070
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV887070 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.182e-11
Identity = 36/81 (44.44%), Postives = 44/81 (54.32%), Query Frame = -2 
Query:  253 IDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVXXXXXXXXXXXXXXXXXXXXXXXLV-TCGKTPPAGFTC 492
            ID LKLGACVD+LGGL+HIG+G      CCP+L GLV+L+AA+                       L+  CGK PP  F C
Sbjct:  263 IDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343
The following BLAST results are available for this feature:
BLAST of CV887070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRF1_SOLLC3.182e-1144.4436.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_029A01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_029_T3_A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887070 ID=CV887070; Name=CV887070; organism=Citrus sinensis; type=EST; length=871bp
TTTTTTAGGAAAATCAAATAATTGCTGCCTTGTCAAGGACATTGAAAACA
CACATACAATGCGACAAATCATATAAAAACAAATGGGTGTACAATTAAAT
GTGACCAAACATTACAATCCCAACAATGAGAGAAAGACAGAGAGAGTGGG
GGAGAGAGAAAAAGAAACAAACAAATAAGTCTCGACATCCTTTCATGTCG
ATTTCTTCCTTCAGTATCCATCATCAATCTACCAACCTTAGATCTAAAGA
GTGCAAGTGAAACCAGCGGGTGGTGTCTTTCCGCAAGTGACAAGAAGCTG
AAGAGCAAGTGGAAGATAGATGTTAAGATTAAGCAGCTTGAGCTTGAGAG
TAGTGCACAAGCAGACAGCAGCTTCTAACTCAACAAGTCCTTGTAGAACT
GGGCAGCATTGGTTAACAACTGGGTCACCAAGACCAATGTGAACCAACCC
ACCAAGAAGGTCCACACAAGCACCCAATTTGAGGGTGTCAATGGGGCATG
TGGCAGCAGCTGGTGGAGGTGGTGTGTATGAACATGGGCATGGCTTCCTA
GCACTTGGTGGGTTAGGGAGAACTGGAGGCAGTGTAACTGGTGGGAGAGT
GGGGAGGTCGACTGGTGGCTTGATCGGCGGGACGGTCACCGGAGGGAGAG
TGACTGGTGGCAAGGGAACTGGGGGTTTGACAATGGGAGGAAGACTGATG
GGTCTAGGCTGCCTAGGTTTCCTGTGCTTCGGGTGCGGCTTGCCACACGT
GCCACAGCCAAGAATGGGAGTGGCTGTGGAGATGAAAAGCATGCAAATGA
TGAGGAGAGCTGAGAGTTTGGAGGAGTCCATTTTTTTTTTTTTTTCTTTA
TTTTAAATCTCTCTTCTTTCT
back to top