CV887069

Overview
NameCV887069
Unique NameCV887069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887069 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 319.316 bits (817), Expect = 1.806e-86
Identity = 176/256 (68.75%), Postives = 195/256 (76.17%), Query Frame = 2
Query:  140 MAAATLPFSRPIPKFSPSPSSETL----KEALKHLNLASFSSTAKSLRALKTTTG----RGSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 883
            MAAAT   +  +   SPS SS+TL       L   N+   SS++KSLR+L  T       GS+L+A M S +A+K P  LDFETSVFKK+ +SLA  +EYIVRGGRDLF  LPDAF GI QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSI            QS GLDFPKNI V+AVCPKGMGPSVRRLY
Sbjct:    1 MAAATSSIAPSLSCPSPSSSSKTLWSSKARTLALPNIGFLSSSSKSLRSLTATVAGNGATGSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDIWETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISVVAVCPKGMGPSVRRLY 256          
BLAST of CV887069 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 4.309e-80
Identity = 163/260 (62.69%), Postives = 190/260 (73.08%), Query Frame = 2
Query:  143 AAATLPFSRPIPKFSPSPSSETLKEALK----HLNLASFSSTAKSLRALKTT-------TGRGSALSAWMASETALKTPFL--LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 883
            A A   FS      + + +S+ LK++ K    +L     SST K+ R+LK          G GSALSA M S  ++ TP     DF++SVFKK+ ++L+  DEYIVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLISD+AQADNYEK+FS MKPNSI            QS+G DFPKNI VIAVCPKGMGPSVRRLY
Sbjct:    3 ATAATTFSLSSSSSTSAAASKALKQSPKPSALNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAPSINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLY 262          
BLAST of CV887069 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.386e-78
Identity = 166/252 (65.87%), Postives = 185/252 (73.41%), Query Frame = 2
Query:  140 MAAATLPFSRPIPKFSPSPSSETLKE----ALKHLNLASFSSTAKSLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 883
            MAA T   S  I     S SS+TL +    +    NL+    + +S+RA ++ T  GSAL A   S      P  LDFETSVFKK+ ++LA  +EYIVRGGRDLF+LLPDAF GI QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVKVGLRKGS SF EAR AGF+EE GTLGDI+ETISGSDLVLLLISD+AQADNYEKIFS +KPNSI            QS+GLDFPKN  VIAVCPKGMGPSVRRLY
Sbjct:    1 MAAVTSSCSTAI-----SASSKTLAKPVAASFAPTNLSFSKLSPQSIRARRSITV-GSALGATKVSAPPATHPVSLDFETSVFKKERVNLAGHEEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKVGLRKGSSSFNEAREAGFSEEKGTLGDIWETISGSDLVLLLISDSAQADNYEKIFSHLKPNSILGLSHGFLLGHLQSIGLDFPKNFSVIAVCPKGMGPSVRRLY 246          
BLAST of CV887069 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.098e-75
Identity = 159/251 (63.35%), Postives = 181/251 (72.11%), Query Frame = 2
Query:  143 AAATLPFSRP---IPKFSPSPSSETLKEALKH-LNLASFSSTAKSLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 883
            A+ TL  S P       + +P + T   A+   ++ A+ +  A   RA+        A+ A M S         LDF+TSVF K+ +SLA  +EYIVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQADNYEKIFS MKPNSI            QS GLDFPKNI VIAVCPKGMGPSVRRLY
Sbjct:    3 ASTTLALSHPKTLAAAAAAAPKAPTAPAAVSFPVSHAACAPLAARRRAVTAMVAAPPAVGAAMPS---------LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLY 244          
BLAST of CV887069 vs. ExPASy Swiss-Prot
Match: ILVC_HELAH (Ketol-acid reductoisomerase OS=Helicobacter acinonychis (strain Sheeba) GN=ilvC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.846e-12
Identity = 48/137 (35.04%), Postives = 72/137 (52.55%), Query Frame = 2
Query:  476 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 883
            Q+G+IG+G+QG AQA NLRD      S + V+VGL +GS S  +A+A GF      + ++ E +  SD+++ L+ D    +  EK +   +K   I            Q   + F K +GVI V PKG G ++R  Y
Sbjct:   20 QVGIIGYGTQGEAQALNLRD------SKVKVRVGLYQGSLSIPKAKAEGF-----EVLEVKELVQKSDVIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQ---VSFKKGVGVILVAPKGPGSALREEY 142          
BLAST of CV887069 vs. ExPASy Swiss-Prot
Match: ILVC_LEPBP (Ketol-acid reductoisomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=ilvC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.560e-12
Identity = 52/136 (38.24%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  479 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPN-SIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 883
            I VIG+GSQG AQAQN++D      S + V +GLR GS+S  EA+ AGF   N     + E    +D++ +L  D  QAD Y+   + ++PN S                 +  PKN+ V  V PKG G  VRR+Y
Sbjct:   20 IAVIGYGSQGHAQAQNMKD------SGLKVIIGLRDGSKSVKEAKEAGFEVYN-----VAEASKKADIIQILAPDTIQADMYK---ADIEPNLSEGKALVFSHGFNIHYDLITPPKNVDVYMVAPKGPGHLVRRVY 141          
BLAST of CV887069 vs. ExPASy Swiss-Prot
Match: ILVC_LEPBA (Ketol-acid reductoisomerase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=ilvC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.560e-12
Identity = 52/136 (38.24%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  479 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPN-SIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 883
            I VIG+GSQG AQAQN++D      S + V +GLR GS+S  EA+ AGF   N     + E    +D++ +L  D  QAD Y+   + ++PN S                 +  PKN+ V  V PKG G  VRR+Y
Sbjct:   20 IAVIGYGSQGHAQAQNMKD------SGLKVIIGLRDGSKSVKEAKEAGFEVYN-----VAEASKKADIIQILAPDTIQADMYK---ADIEPNLSEGKALVFSHGFNIHYDLITPPKNVDVYMVAPKGPGHLVRRVY 141          
BLAST of CV887069 vs. ExPASy Swiss-Prot
Match: ILVC_HELPS (Ketol-acid reductoisomerase OS=Helicobacter pylori (strain Shi470) GN=ilvC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.568e-12
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 2
Query:  476 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 883
            Q+G+IG+G+QG AQA NLRD      S + V++GL +GS S  +A+A GF      + ++ E +  SDL++ L+ D    +  EK +   +K   I            Q +    PK +G I V PKG G ++R  Y
Sbjct:   20 QVGIIGYGAQGEAQALNLRD------SKVKVRIGLYQGSLSVPKAKAEGF-----EVLEVKELVQQSDLIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQVV---LPKGVGAILVAPKGPGSALREEY 142          
BLAST of CV887069 vs. ExPASy Swiss-Prot
Match: ILVC_HELPY (Ketol-acid reductoisomerase OS=Helicobacter pylori GN=ilvC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 45/137 (32.85%), Postives = 71/137 (51.82%), Query Frame = 2
Query:  476 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSIXXXXXXXXXXXXQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 883
            Q+G+IG+G+QG AQA NLRDS  +A      ++GL +GS S ++A+  GF      + ++ E +  SD+++ L+ D    +  EK +   +K   I            Q +    PK +G I V PKG G ++R  Y
Sbjct:   20 QVGIIGYGAQGEAQALNLRDSKVKA------RIGLYQGSLSVSKAKKEGF-----EVLEVKELVQNSDVIMALLPDELHKEVLEKEVIPFLKEGQIVGFAHGFSVHFNQVV---LPKGVGAILVAPKGPGSALREEY 142          
BLAST of CV887069 vs. ExPASy Swiss-Prot
Match: ILVC_LEPIN (Ketol-acid reductoisomerase OS=Leptospira interrogans GN=ilvC PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 50/138 (36.23%), Postives = 73/138 (52.90%), Query Frame = 2
Query:  479 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSMGLDF---PKNIGVIAVCPKGMGPSVRRLY 883
            I VIG+GSQG AQAQN++D      S + V +GL++GS+S  +A+ AGF      +  + E    +D++ +L  D  QAD Y+K    ++PN               ++  DF   PK + V  V PKG G  VRR+Y
Sbjct:   20 IAVIGYGSQGHAQAQNMKD------SGLKVIIGLKEGSKSIQDAKNAGF-----EVYSVSEASQKADIIQILAPDTIQADLYKK---DIEPN--LKKGDALVFSHGFNIHYDFIKPPKEVDVYMVAPKGPGHLVRRVY 141          
The following BLAST results are available for this feature:
BLAST of CV887069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ILV5_ARATH1.806e-8668.75Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_SPIOL4.309e-8062.69Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
ILV5_PEA1.386e-7865.87Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_ORYSJ1.098e-7563.35Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
ILVC_HELAH3.846e-1235.04Ketol-acid reductoisomerase OS=Helicobacter acinon... [more]
ILVC_LEPBP6.560e-1238.24Ketol-acid reductoisomerase OS=Leptospira biflexa ... [more]
ILVC_LEPBA6.560e-1238.24Ketol-acid reductoisomerase OS=Leptospira biflexa ... [more]
ILVC_HELPS8.568e-1234.31Ketol-acid reductoisomerase OS=Helicobacter pylori... [more]
ILVC_HELPY3.256e-1132.85Ketol-acid reductoisomerase OS=Helicobacter pylori... [more]
ILVC_LEPIN4.252e-1136.23Ketol-acid reductoisomerase OS=Leptospira interrog... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026H12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T7_H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887069 ID=CV887069; Name=CV887069; organism=Citrus sinensis; type=EST; length=885bp
TGGGCACTCTTCTTGTAACATTCAGGTTAGTCCAACTGAATTTGGAAGGT
TGTGTCAGTCTCCGTGGGTCTCTCCACAGCTGCCGTTGTATCGTCTTCGA
CGGCTGCCATCAAATTCTGAAGGTGAGTAAAAAAAAAAAATGGCGGCGGC
TACTTTACCATTTAGTCGCCCGATCCCCAAATTTAGTCCATCGCCGTCGT
CCGAAACCCTAAAAGAAGCACTCAAGCATCTCAATCTAGCGTCTTTCTCA
TCCACCGCGAAGTCCTTGAGAGCTCTCAAAACTACTACAGGCAGGGGCTC
AGCTCTCAGCGCTTGGATGGCGTCCGAGACAGCTCTCAAGACACCTTTCT
TGCTGGATTTTGAGACATCTGTCTTTAAGAAGGACATGATATCCCTGGCT
GACCGCGATGAGTACATTGTGAGAGGAGGAAGGGATTTGTTTAACTTGCT
GCCGGACGCATTCAACGGGATTAACCAGATTGGGGTGATTGGCTGGGGTT
CCCAGGGACCTGCCCAAGCTCAGAATTTGAGGGATTCCCTTGCTGAAGCT
AAATCTGATATTGTTGTCAAGGTTGGGCTTAGGAAGGGCTCTCGTTCTTT
TGCTGAAGCTCGTGCTGCTGGTTTTACTGAAGAGAATGGAACTTTGGGGG
ATATATATGAAACTATTTCAGGCAGTGATCTTGTGTTATTATTGATTTCT
GATGCTGCTCAGGCGGATAATTATGAGAAGATATTCTCTTGCATGAAACC
AAACAGCATCCTTGGACTTTCCCATGGGTTCCTTCTTGGGCATTTGCAGT
CAATGGGACTTGATTTCCCAAAGAATATCGGTGTGATTGCTGTGTGTCCC
AAGGGAATGGGTCCATCTGTGAGGAGACTCTATGT
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