CV887068

Overview
NameCV887068
Unique NameCV887068
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV887068 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 393.275 bits (1009), Expect = 9.400e-109
Identity = 192/209 (91.87%), Postives = 203/209 (97.13%), Query Frame = -1
Query:  233 SASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 859
            SAS+YPCMEILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPL+PFTAGV+ A+MMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVD+ APIN DLISNF+SDPVHGAI+VCA+LRPT+DISVP  ADFVRPELRQ SN
Sbjct:  373 SASFYPCMEILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLYPFTAGVFVAMMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAPINQDLISNFVSDPVHGAIQVCAELRPTLDISVPAAADFVRPELRQCSN 581          
BLAST of CV887068 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 393.275 bits (1009), Expect = 9.400e-109
Identity = 194/209 (92.82%), Postives = 199/209 (95.22%), Query Frame = -1
Query:  233 SASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 859
            SAS+YPCMEILYECYEDV +GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGERVR +RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVD+ A IN DLISNF SDPVHGAIEVCAQLRPTVDISVP DADFVRPELRQ SN
Sbjct:  383 SASFYPCMEILYECYEDVQSGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGERVRKSRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDSGAAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSSN 591          
BLAST of CV887068 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 7.958e-108
Identity = 189/208 (90.87%), Postives = 198/208 (95.19%), Query Frame = -1
Query:  236 SASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGS 859
            SAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVGE+VRSTRP  DLGPLHPFTAGVY ALMMAQIE+LRKKGHSYSEIINESVIESVDSLNPFMHARGV+FMVDNCSTTARLGSRKWAPRFDYILTQQA V VD DAPIN DLISNF+SDPVHGAIEVCA+LRPTVDISVP +ADFVRPELRQ S
Sbjct:  371 SASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGEKVRSTRPENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFMVDNCSTTARLGSRKWAPRFDYILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVPANADFVRPELRQSS 578          
BLAST of CV887068 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 9.728e-106
Identity = 190/206 (92.23%), Postives = 197/206 (95.63%), Query Frame = -1
Query:  242 SASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLHPFTAGVYAALMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQ 859
            SASYYP M+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGE+VRS RPAGDLGPL+PFTAGVY ALMMAQIEILRKKGHSYSEIINESVIE+VDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYIL+QQALVAVDN APIN DLISNFLSDPVH AI VCAQLRP+VDISV  DADFVRPELRQ
Sbjct:  389 SASYYPSMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGEKVRSVRPAGDLGPLYPFTAGVYVALMMAQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQ 594          
BLAST of CV887068 vs. ExPASy Swiss-Prot
Match: ILV5_NEUCR (Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa GN=ilv-2 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.109e-11
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = -1
Query:  365 LMMAQIEILRKKGHSYSEIINESVIESVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQALVAVDN---DAPINGD 613
            + +AQ E+LR++GHS SE  NE+V E+  SL P + A G+ +M D CSTTAR G+  W P+F     + AL  V N   D+  NGD
Sbjct:  276 MFLAQYEVLRERGHSPSEAFNETVEEATQSLYPLIGAHGMDWMFDACSTTARRGAIDWTPKF-----KDALKPVFNNLYDSVKNGD 356          
The following BLAST results are available for this feature:
BLAST of CV887068 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ILV5_PEA9.400e-10991.87Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_ARATH9.400e-10992.82Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_ORYSJ7.958e-10890.87Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
ILV5_SPIOL9.728e-10692.23Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
ILV5_NEUCR3.109e-1145.35Ketol-acid reductoisomerase, mitochondrial OS=Neur... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026H12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T3_H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887068 ID=CV887068; Name=CV887068; organism=Citrus sinensis; type=EST; length=859bp
TATTCTGTCAGCGCATTCCTCGGAAACATACTATTATTCCACCAAATTCA
AAAACCAGAAGCATATTCTCATGTCTTCTTCAACAAAACCGGACATAGTG
CAACACTCGCCCAGCACACTAAATAAATAAGCGGCAACTCACACGACTAA
GCAAAGTCTCTACCTCCAATATCCCTAGGGGGAATTATTTTTTGGGCTAG
AAACAAAAAAATTAAGGACTCACCAGGACTCAATTGCTACCCTGACGCAA
CTCTGGGCGCACAAAATCTGCATCTGGTGGCACTGAAATGTCAACAGTTG
GTCTCAACTGAGCACAGACTTCAATGGCTCCATGGACTGGATCAGAAAGG
AAGTTGCTGATGAGATCCCCATTGATGGGGGCATCATTGTCCACTGCCAC
CAAGGCTTGTTGTGTCAGGATGTAATCAAAACGAGGGGCCCATTTCCTTG
ATCCCAAACGGGCTGTGGTAGAGCAGTTGTCCACCATAAATGAAACTCCA
CGAGCATGCATGAATGGATTCAATGAATCCACTGACTCAATCACACTTTC
ATTGATGATCTCAGAATAGGAGTGCCCTTTCTTCCTCAGGATCTCAATCT
GGGCCATCATCAGAGCCGCATAAACACCTGCTGTGAATGGGTGTAATGGG
CCTAAGTCACCTGCTGGACGTGTTGATCGGACTCGCTCACCAACTTTCCA
CATGCGAGTCTGATCAATTTTTCCCATAGGGAAAGCTGGTAGACCTTCCT
TTTCATAAAACCGACGTCCAGCCAAGACAACACTGCGGATCTCACTGCCA
GCGGCCACATCTTCATAGCACTCATATAAGATTTCCATGCACGGATAATA
TGAGGCACT
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