EL492478

Overview
NameEL492478
Unique NameEL492478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length218
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1828 contig Csv1_Contig1828:276..493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EL492478 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.118e-12
Identity = 28/54 (51.85%), Postives = 41/54 (75.93%), Query Frame = -3 
Query:   13 EDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKD 174
            +D++C+F G+L+N   L + YGLS+   EAM ++EAY+ LRDR PYP DQV+K+
Sbjct:   75 DDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKE 128
The following BLAST results are available for this feature:
BLAST of EL492478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC5.118e-1251.85Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionC1021 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC1021, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492478 ID=EL492478; Name=EL492478; organism=Citrus sinensis; type=EST; length=218bp
GACTGCGTAGTGATCCTTGACAACCTGATCAGCTGGGTAAGGACCCCGGT
CTCTGAGCGTACGATACGCCTCTATCACAAACATGGCCTCATCGGTTCCC
TTTGACAACCCATATTGCCTGATCAGCGAGCACAAGTTGTTCAAGGACCC
CATGAACAGACAGTATATGTCCTCAAACCCGCAAAACAACCTTCGATCCT
TGGTTACTCAGGACTCAT
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