CV887017

Overview
NameCV887017
Unique NameCV887017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length978
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV887017 vs. ExPASy Swiss-Prot
Match: T2EB_DICDI (General transcription factor IIE subunit 2 OS=Dictyostelium discoideum GN=gtf2e2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.937e-13
Identity = 41/132 (31.06%), Postives = 75/132 (56.82%), Query Frame = -1 
Query:  535 VFDSLRNNPKVHYDGK-RFSYKSKHDLKDKSQLLVLVRKFPEGIAVIDLKDSYPTVMEDLQALKAAGQIWLLSNFDSQEDIAYPNDPRVPIKADDDLKLLFRDIALPSDMLDIEKDLQKNGMKPATNTQKRR 927
            + + LRNN K+   G  RFS+K K +++ +  +L L+  +P GI V +L +SY     D++ LK   QI+ +   +S  DI +PND R+ +    +L  +++ I LP++  D+EK+++  G+    + +  R
Sbjct:  106 ILELLRNNEKIIDHGNDRFSFKPKFNVRTQRDILDLLPNYPGGILVSELAESYNNAESDVKKLKETKQIFAIKAAESACDIIFPNDERLRVPLSSELVDMWKSIKLPNE-ADLEKEMKDAGLSVVESVESAR 236
The following BLAST results are available for this feature:
BLAST of CV887017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
T2EB_DICDI6.937e-1331.06General transcription factor IIE subunit 2 OS=Dict... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026F04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T7_F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV887017 ID=CV887017; Name=CV887017; organism=Citrus sinensis; type=EST; length=978bp
TTTTTTTAGACAAAAGAGCTTCACATTGAGCAATAATAGCATTCACCAAA
ATACAATTTTTTTTCCTCACTTTTTTTGGTGGTTTCTCAACAGAACAATC
TACAAAAGAGATTGGGCACCTTTATCTCAAATACAGACGAAAATAAGGTG
AGTATGTTTAACAAGTATAACAATTAGATTGGGAAGCAGCCTCTGCTAGG
CAGGTGACGTTTCATTCACCCATAAGTTTTAAATGTCAATGGTCCATAAA
AGCTCCAGCATGGCTCATCACTGGTCCAGACCAGTAAAACAAAACCTATC
TACAATACCCAGGCGAAACCATTTGATACCTCATCAAAGTAACATGTCTC
AGCCAAATGTTACTCTCTGCATGGCAGTACAGCAAGCCCTTGATACTTTC
AAGTTTTAAGAGCCATTAAGCTTTTGGAAAAGCTCTGGAAGATGTGCATT
GGTCAGCTTAGTCCTCTTGCTGATCTCATGCTTCTTCTTCTTTGGCTTGT
TCTTAGAGGAAATACCCTGAATCTGTGCCGCAGCCCTCCTCTTTTGAGTA
TTGGTAGCAGGCTTCATGCCGTTCTTCTGAAGATCCTTCTCAATGTCCAG
CATGTCAGAAGGTAATGCAATGTCTCGGAAAAGAAGTTTAAGGTCATCAT
CCGCCTTAATAGGTACCCTGGGGTCATTAGGGTAGGCAATGTCTTCCTGT
GAATCGAAGTTTGACAACAACCAAATCTGACCCGCAGCTTTTAAAGCCTG
TAAGTCCTCCATCACAGTTGGATATGAATCTTTCAGGTCAATGACAGCAA
TTCCTTCTGGAAACTTACGCACTAAGACAAGTAGTTGACTCTTGTCCTTC
AAATCATGCTTCGACTTGTAAGAAAAACGCTTCCCATCATAGTGCACTTT
TGGGTTATTTCTCAAGCTGTCAAAAACAGCTTTATTGGCATTCACATCAA
CGTAACAATCTCTATTTATTTCTTCCGG
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