EY665652

Overview
NameEY665652
Unique NameEY665652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX36_HUMAN (Probable ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.419e-45
Identity = 89/151 (58.94%), Postives = 115/151 (76.16%), Query Frame = 2
Query:   47 GXDPLNKRWDLLXXXXFXRDXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            G D ++   DLL      +   KF+IIPLHS++P+V Q +VFKR PPG RKI+++TNIAET+ITIDDVVYVID G++KE  +D  NN+ST+ + WVSKA+AKQR GRAGR Q G  Y LY+ LRA+ L D+Q+PEI R P+EELCLQ+K+L
Sbjct:  497 GWDNISTLHDLLMSQVMFKSD-KFLIIPLHSLMPTVNQTQVFKRTPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMSAEWVSKANAKQRKGRAGRVQPGHCYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKIL 646          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX36_MOUSE (Probable ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.653e-44
Identity = 88/151 (58.28%), Postives = 115/151 (76.16%), Query Frame = 2
Query:   47 GXDPLNKRWDLLXXXXFXRDXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLL 499
            G D ++   DLL      +   KF+IIPLHS++P+V Q +VFK+ PPG RKI+++TNIAET+ITIDDVVYVID G++KE  +D  NN+ST+ + WVSKA+AKQR GRAGR Q G  Y LY+ LRA+ L D+Q+PEI R P+EELCLQ+K+L
Sbjct:  490 GWDNISTLHDLLMSQVMFKSD-KFLIIPLHSLMPTVNQTQVFKKTPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTQNNISTMSAEWVSKANAKQRKGRAGRVQPGHCYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKIL 639          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: YTDC2_MOUSE (Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 7.948e-40
Identity = 80/142 (56.34%), Postives = 107/142 (75.35%), Query Frame = 2
Query:   95 FXRDXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDP-NCNI 517
            F  +  ++ +  LHS + +  QKKV K PP G RKIILSTNIAET+IT++DVV+VIDSG++KEKS+D  N V+ L+  W+SKASA QR GRAGRC+ GI +RL+S+LR  ++ +FQ PE+ R+P++ELCL  KLL P NC I
Sbjct:  664 FADNTHRYQVFMLHSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKLLAPVNCTI 805          

HSP 2 Score: 23.8682 bits (50), Expect = 7.948e-40
Identity = 15/47 (31.91%), Postives = 22/47 (46.81%), Query Frame = 1
Query:  544 PPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKLGCLSGPPIEGNKKL 684
            PP +  +RNA+ +L+ I  +   E +  LG  L  L   P  G   L
Sbjct:  815 PPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHLGKMVL 861          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: YTDC2_HUMAN (Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 1.758e-39
Identity = 80/142 (56.34%), Postives = 106/142 (74.65%), Query Frame = 2
Query:   95 FXRDXXKFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDP-NCNI 517
            F     ++ +  LHS + +  QKKV K PP G RKIILSTNIAET+IT++DVV+VIDSG++KEKS+D  N V+ L+  W+SKASA QR GRAGRC+ GI +RL+S+LR  ++ +FQ PE+ R+P++ELCL  KLL P NC I
Sbjct:  649 FADSTHRYQVFMLHSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKLLAPVNCPI 790          

HSP 2 Score: 23.8682 bits (50), Expect = 1.758e-39
Identity = 15/47 (31.91%), Postives = 22/47 (46.81%), Query Frame = 1
Query:  544 PPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKLGCLSGPPIEGNKKL 684
            PP +  +RNA+ +L+ I  +   E +  LG  L  L   P  G   L
Sbjct:  800 PPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVL 846          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX30_BOVIN (Putative ATP-dependent RNA helicase DHX30 OS=Bos taurus GN=DHX30 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.057e-37
Identity = 69/131 (52.67%), Postives = 96/131 (73.28%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDP 505
            K++I+P+HS +P + QK +F++PP G RKI+L+TNIAET+ITI+D+V+V+DSG  KE+ YD    VS L++ WVS+A+  QR GRAGRCQ+G  Y L+ + R   +  FQVPEI R P+E L LQ K+  P
Sbjct:  724 KYLILPVHSNIPMMDQKAIFQQPPIGVRKIVLATNIAETSITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRSRLEKMAPFQVPEILRTPLENLVLQAKIHMP 854          

HSP 2 Score: 31.5722 bits (70), Expect = 2.057e-37
Identity = 15/49 (30.61%), Postives = 30/49 (61.22%), Query Frame = 1
Query:  517 LKILAEDINPPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKLGCLSGPP 663
            ++ L++ ++ P  + +  A+I+LQ+IG L   E +  LG++L  +S  P
Sbjct:  859 VEFLSKAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTDP 907          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX30_HUMAN (Putative ATP-dependent RNA helicase DHX30 OS=Homo sapiens GN=DHX30 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.057e-37
Identity = 69/131 (52.67%), Postives = 96/131 (73.28%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDP 505
            K++I+P+HS +P + QK +F++PP G RKI+L+TNIAET+ITI+D+V+V+DSG  KE+ YD    VS L++ WVS+A+  QR GRAGRCQ+G  Y L+ + R   +  FQVPEI R P+E L LQ K+  P
Sbjct:  698 KYLILPVHSNIPMMDQKAIFQQPPVGVRKIVLATNIAETSITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRSRLEKMVPFQVPEILRTPLENLVLQAKIHMP 828          

HSP 2 Score: 31.5722 bits (70), Expect = 2.057e-37
Identity = 15/49 (30.61%), Postives = 30/49 (61.22%), Query Frame = 1
Query:  517 LKILAEDINPPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKLGCLSGPP 663
            ++ L++ ++ P  + +  A+I+LQ+IG L   E +  LG++L  +S  P
Sbjct:  833 VEFLSKAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTDP 881          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX30_MOUSE (Putative ATP-dependent RNA helicase DHX30 OS=Mus musculus GN=Dhx30 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.490e-37
Identity = 68/131 (51.91%), Postives = 96/131 (73.28%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDP 505
            K++I+P+HS +P + QK +F++PP G RKI+L+TNIAET+IT++D+V+V+DSG  KE+ YD    VS L++ WVS+A+  QR GRAGRCQ+G  Y L+ + R   +  FQVPEI R P+E L LQ K+  P
Sbjct:  721 KYLILPVHSNIPMMDQKAIFQQPPLGVRKIVLATNIAETSITVNDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRSRLEKMVPFQVPEILRTPLENLVLQAKIHMP 851          

HSP 2 Score: 31.5722 bits (70), Expect = 3.490e-37
Identity = 15/49 (30.61%), Postives = 30/49 (61.22%), Query Frame = 1
Query:  517 LKILAEDINPPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKLGCLSGPP 663
            ++ L++ ++ P  + +  A+I+LQ+IG L   E +  LG++L  +S  P
Sbjct:  856 VEFLSKAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTDP 904          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX30_RAT (Putative ATP-dependent RNA helicase DHX30 OS=Rattus norvegicus GN=Dhx30 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.491e-37
Identity = 68/131 (51.91%), Postives = 96/131 (73.28%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDP 505
            K++I+P+HS +P + QK +F++PP G RKI+L+TNIAET+IT++D+V+V+DSG  KE+ YD    VS L++ WVS+A+  QR GRAGRCQ+G  Y L+ + R   +  FQVPEI R P+E L LQ K+  P
Sbjct:  698 KYLILPVHSNIPMMDQKAIFQQPPLGVRKIVLATNIAETSITVNDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRSRLEKMVPFQVPEILRTPLENLVLQAKIHMP 828          

HSP 2 Score: 31.5722 bits (70), Expect = 3.491e-37
Identity = 15/49 (30.61%), Postives = 30/49 (61.22%), Query Frame = 1
Query:  517 LKILAEDINPPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKLGCLSGPP 663
            ++ L++ ++ P  + +  A+I+LQ+IG L   E +  LG++L  +S  P
Sbjct:  833 VEFLSKAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTDP 881          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX30_PONAB (Putative ATP-dependent RNA helicase DHX30 OS=Pongo abelii GN=DHX30 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.717e-37
Identity = 68/131 (51.91%), Postives = 95/131 (72.52%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDP 505
            K++I+P+HS +P + QK +F++PP G RKI+L+TNIAET+ TI+D+V+V+DSG  KE+ YD    VS L++ WVS+A+  QR GRAGRCQ+G  Y L+ + R   +  FQVPEI R P+E L LQ K+  P
Sbjct:  698 KYLILPVHSNIPMMDQKAIFQQPPVGVRKIVLATNIAETSTTINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRSRLEKMVPFQVPEILRTPLENLVLQAKIHMP 828          

HSP 2 Score: 31.5722 bits (70), Expect = 7.717e-37
Identity = 15/49 (30.61%), Postives = 30/49 (61.22%), Query Frame = 1
Query:  517 LKILAEDINPPVSETIRNAIIVLQDIGGLPLDEKVPNLGEKLGCLSGPP 663
            ++ L++ ++ P  + +  A+I+LQ+IG L   E +  LG++L  +S  P
Sbjct:  833 VEFLSKAVDSPNIKAVDEAVILLQEIGVLDQREYLTTLGQRLAHISTEP 881          
BLAST of EY665652 vs. ExPASy Swiss-Prot
Match: DHX30_CHICK (Putative ATP-dependent RNA helicase DHX30 OS=Gallus gallus GN=DHX30 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.832e-35
Identity = 67/131 (51.15%), Postives = 98/131 (74.81%), Query Frame = 2
Query:  113 KFVIIPLHSMVPSVQQKKVFKRPPPGCRKIILSTNIAETAITIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASAKQRAGRAGRCQAGIWYRLYSQLRAASLPDFQVPEIKRIPIEELCLQVKLLDP 505
            +++++P+HS +P + Q+ +F+RPPPG RKI+L+TNIAET+ITI+D+V+V+DSG  KE+ YD    VS L++ WVSK++  QR GRAGRCQ+G  Y L+ + R   +P +QVPEI R P+E L +Q K+  P
Sbjct:  741 RYLVLPVHSNIPMMDQQNIFQRPPPGVRKIVLATNIAETSITINDIVHVVDSGTHKEERYDLKTKVSCLETVWVSKSNVVQRRGRAGRCQSGFAYHLFPRSRLDKMPTYQVPEILRTPLENLVVQAKIHMP 871          
The following BLAST results are available for this feature:
BLAST of EY665652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
DHX36_HUMAN7.419e-4558.94Probable ATP-dependent RNA helicase DHX36 OS=Homo ... [more]
DHX36_MOUSE1.653e-4458.28Probable ATP-dependent RNA helicase DHX36 OS=Mus m... [more]
YTDC2_MOUSE7.948e-4056.34Probable ATP-dependent RNA helicase YTHDC2 OS=Mus ... [more]
YTDC2_HUMAN1.758e-3956.34Probable ATP-dependent RNA helicase YTHDC2 OS=Homo... [more]
DHX30_BOVIN2.057e-3752.67Putative ATP-dependent RNA helicase DHX30 OS=Bos t... [more]
DHX30_HUMAN2.057e-3752.67Putative ATP-dependent RNA helicase DHX30 OS=Homo ... [more]
DHX30_MOUSE3.490e-3751.91Putative ATP-dependent RNA helicase DHX30 OS=Mus m... [more]
DHX30_RAT3.491e-3751.91Putative ATP-dependent RNA helicase DHX30 OS=Rattu... [more]
DHX30_PONAB7.717e-3751.91Putative ATP-dependent RNA helicase DHX30 OS=Pongo... [more]
DHX30_CHICK1.832e-3551.15Putative ATP-dependent RNA helicase DHX30 OS=Gallu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-A10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665652 ID=EY665652; Name=EY665652; organism=Citrus sinensis; type=EST; length=867bp
AAATATGCATGGATTCCCTTTAAAGAGGAATGNTTGNNNNNNNNNAGGAN
GGGACCCTTTAAATAAAAGGTGGGATTTATTGNTTGNTAANNNNTTTTTN
AGAGATANTTNNAAGTTTGTTATAATACCTCTTCATTCTATGGTTCCCTC
TGTGCAGCAAAAGAAGGTGTTTAAACGCCCACCGCCTGGTTGTCGGAAAA
TTATTCTTTCAACCAATATTGCAGAAACTGCCATCACCATTGATGATGTT
GTCTATGTTATAGACAGTGGTCGAATGAAAGAAAAAAGTTATGATCCTTA
CAACAATGTATCAACTCTTCAATCTTCCTGGGTGTCAAAAGCAAGTGCAA
AACAGAGGGCGGGACGTGCAGGCCGCTGTCAGGCTGGAATCTGGTATCGT
CTTTATTCTCAACTTCGAGCAGCTTCTTTGCCTGATTTCCAGGTCCCAGA
AATTAAGAGAATTCCAATTGAGGAACTCTGTTTACAGGTGAAGTTGCTTG
ATCCAAATTGTAATATTTGAAAATTCTTGCAGAAGACATAAACCCTCCAG
TTTCTGAAACTATTCGAAATGCAATCATTGTCCTTCAGGATATTGGGGGT
TTGCCCCTTGATGAAAAAGTACCGAACTTGGGGGAAAAGTTAGGTTGCCT
TTCCGGTCCTCCCATTGAAGGAAACAAAAAGCTTTCCTTTGCCCAAACTG
GTGGACTGGTAAAAACCCACTTTTAACCCTGGCCGGGGGCTCCGGACATA
TAAGGGACCCCTTCACCCCCTCCCCATATCACCCAAAGAAAAAAAAAAAA
AAACCACTCGGCGGGAAATTTTGTAACCTTGTTTCTTTGGCACCGGGGGG
GGAAAAGTAAACACCCT
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