CV886998

Overview
NameCV886998
Unique NameCV886998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886998 vs. ExPASy Swiss-Prot
Match: BEE3_ARATH (Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.065e-44
Identity = 96/161 (59.63%), Postives = 118/161 (73.29%), Query Frame = -1
Query:  192 TPASGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMYYDFNSELDTTETMPGTNECDAQDMERMVREGYGGPSYFH-SAWSL 671
            T ++ S  +S+N      +  S R+ KR+  R  EK +EV+HVRA+RGQATDSHS+AERVRR KINERL+CLQD+VPGCYKTMGMA MLD IINYV+SLQNQ+EFLSMKL+AAS YYDFNSE D  E+M      +A +M     +G  G S FH S+W+L
Sbjct:  106 TLSTSSAQVSINGN-ISTKNNSSRRGKRSKNREEEKEREVVHVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSETDAVESMQKAKAREAVEM----GQGRDGSSVFHSSSWTL 261          
BLAST of CV886998 vs. ExPASy Swiss-Prot
Match: BEE1_ARATH (Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.065e-44
Identity = 109/220 (49.55%), Postives = 132/220 (60.00%), Query Frame = -1
Query:  192 SFFDHHQQPQLCMSFADNNIQSEALVVPSIGLIADFSHDTSNGKKAAAHTVESFMNLSPTPASG-SGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMYYDFNSELDTTETMPGTNECDAQDMERMVREGYGGPSYFHSAWSL 848
            S F HH Q QL + F  N+  S      +    + F H   N              LS +  SG S   +V    TG     G++ K+  E   EK +EV+HVRA+RGQATDSHSLAERVRR KINERLRCLQD+VPGCYK MGMA MLD IINYV+SLQNQ+EFLSMKL+AAS +YDFNSE D  ++M      +  +M R  R+  G P +  S WSL
Sbjct:   49 SLFLHHHQQQL-LHFPGNSPDSSN----NFSSTSSFLHSDHNIVDETKKRKALLPTLSSSETSGVSDNTNVIATETGSLR-RGKRLKKKKEEEDEKEREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQVEFLSMKLTAASSFYDFNSETDAVDSMQRAKARETVEMGRQTRD--GSPVFHLSTWSL 260          
BLAST of CV886998 vs. ExPASy Swiss-Prot
Match: BH075_ARATH (Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.391e-44
Identity = 96/147 (65.31%), Postives = 112/147 (76.19%), Query Frame = -1
Query:  225 SVNNKGTGMQGLSGRKRKRNNERVV------EKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMYYDFNS-ELDTTETMPGTNECDAQDMERMVREGYG 644
            +   KG   +  S R+RKR+ E         +KPK+V+HVRAKRGQATDSHSLAERVRREKINERL+CLQDLVPGCYK MGMAVMLDVII+YVRSLQNQIEFLSMKLSAAS  YD NS +++ T+   G N   A +MER++RE  G
Sbjct:   65 NTRRKGNKEESGSKRRRKRSEEEEAMNGDETQKPKDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQIEFLSMKLSAASACYDLNSLDIEPTDIFQGGNIHSAAEMERILRESVG 211          
BLAST of CV886998 vs. ExPASy Swiss-Prot
Match: BH137_ARATH (Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.083e-32
Identity = 86/193 (44.56%), Postives = 111/193 (57.51%), Query Frame = -1
Query:  300 SFADNNIQSEALVVPSIGLIADFSHDTSNGKKAAAHTVESFMNLSPTPASGSGLL----------------------SVNNKGTGMQGLSGRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAAS-MYYDFNSELD 809
            SF D N       +P+I  + D S    N  K      E   N + T  +GS                         + NN   G++G   +K+KR ++   E P + IHVRA+RGQATDSHSLAERVRREKI+ER+R LQ+LVPGC K  G A+MLD IINYV++LQ Q+EFLSMKL++ S + YDF S+LD
Sbjct:   31 SFIDQN---HLYPLPNISTVEDISFLEYNVDKTENSGSEKLANTTKTATTGSSSCDQLSHGPSAITNTGKTRGRKARNSNNSKEGVEGRKSKKQKRGSKE--EPPTDYIHVRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSISPVVYDFGSDLD 218          
BLAST of CV886998 vs. ExPASy Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.155e-29
Identity = 67/99 (67.68%), Postives = 77/99 (77.78%), Query Frame = -1
Query:  312 GRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAAS-MYYDFN 605
            G   K NN +  E PK+ IHVRA+RGQATDSHSLAERVRREKI ER++ LQDLVPGC K  G A+MLD IINYV+SLQ Q+EFLSMKLS+ +    DFN
Sbjct:  281 GEGNKSNNTKPPEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFN 379          
BLAST of CV886998 vs. ExPASy Swiss-Prot
Match: BH077_ARATH (Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.676e-29
Identity = 78/183 (42.62%), Postives = 106/183 (57.92%), Query Frame = -1
Query:  204 TSNGKKAAAHTVESFMNLSPTPASGSGLLSVNNK----GTGMQGLSGRKRKRNNE---RVVEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMYYDFNSELDTTETMPGTNECDAQDMERMVREGYGGPSYFHS 731
            + NGK++ A +  +  N   +  +G       +K    G+   G+     K +N+   +  E PK+ IHVRA+RGQATDSHSLAER RREKI+ER+  LQDLVPGC +  G AVMLD IINYV+SLQ Q+EFLSMKL+  +   +FN+    +  M    E   Q +  M       PS ++S
Sbjct:  122 SGNGKESPASSSLTASNSKVSGENGGSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMEFNANASLSTEMIQPGESLTQSLYAMACSEQRLPSAYYS 304          
BLAST of CV886998 vs. ExPASy Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.070e-28
Identity = 66/113 (58.41%), Postives = 86/113 (76.11%), Query Frame = -1
Query:  273 RKRKRNNERV--VEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMYYDFNSE-LDTTETMPGTN 602
            +K + N ++   ++  K+ IHVRA+RGQATDSHSLAERVRREKI+ER++ LQDLVPGC K  G A+MLD IINYV+SLQ Q+EFLSMKLS+ +   DFN + L + +  P +N
Sbjct:  237 KKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSKDIFPSSN 349          
BLAST of CV886998 vs. ExPASy Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.017e-27
Identity = 64/104 (61.54%), Postives = 78/104 (75.00%), Query Frame = -1
Query:  306 GLSGRKRKRNNERVVEKPKE-VIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMYYDFNSE 614
            G      K+  ++  + PK+  IHVRA+RGQAT+SHSLAERVRREKI+ER++ LQDLVPGC K  G AVMLD IINYV+SLQ Q+EFLSMKL+  +   DFN E
Sbjct:  279 GKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLE 382          
BLAST of CV886998 vs. ExPASy Swiss-Prot
Match: BH076_ARATH (Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.308e-26
Identity = 62/82 (75.61%), Postives = 70/82 (85.37%), Query Frame = -1
Query:  306 IHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAASMYYDFNSE 551
            IH+RA+RGQAT+SHSLAERVRREKI+ER++ LQDLVPGC K  G AVMLD IINYV+SLQ QIEFLSMKLSA +   DFN E
Sbjct:  221 IHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFNLE 302          
BLAST of CV886998 vs. ExPASy Swiss-Prot
Match: BH079_ARATH (Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.475e-26
Identity = 60/111 (54.05%), Postives = 78/111 (70.27%), Query Frame = -1
Query:  330 SGSGLLSVNNKGTGMQGLSGRKRKRNNERVVEKPKEVIHVRAKRGQATDSHSLAERVRREKINERLRCLQDLVPGCYKTMGMAVMLDVIINYVRSLQNQIEFLSMKLSAAS 662
            SG+G  S+  +G    G  G K      +  E PK+ IHVRA+RGQATD HSLAER RREKI+E++  LQD++PGC K +G A++LD IINY++SLQ Q+EFLSMKL   +
Sbjct:  115 SGNGDGSMRPEGETSSGGGGSKATEQKNKP-EPPKDYIHVRARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVN 224          
The following BLAST results are available for this feature:
BLAST of CV886998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
BEE3_ARATH1.065e-4459.63Transcription factor BEE 3 OS=Arabidopsis thaliana... [more]
BEE1_ARATH1.065e-4449.55Transcription factor BEE 1 OS=Arabidopsis thaliana... [more]
BH075_ARATH1.391e-4465.31Transcription factor bHLH75 OS=Arabidopsis thalian... [more]
BH137_ARATH2.083e-3244.56Transcription factor bHLH137 OS=Arabidopsis thalia... [more]
BH078_ARATH2.155e-2967.68Transcription factor bHLH78 OS=Arabidopsis thalian... [more]
BH077_ARATH3.676e-2942.62Transcription factor bHLH77 OS=Arabidopsis thalian... [more]
BH062_ARATH1.070e-2858.41Transcription factor bHLH62 OS=Arabidopsis thalian... [more]
BH049_ARATH2.017e-2761.54Transcription factor bHLH49 OS=Arabidopsis thalian... [more]
BH076_ARATH1.308e-2675.61Transcription factor bHLH76 OS=Arabidopsis thalian... [more]
BH079_ARATH8.475e-2654.05Transcription factor bHLH79 OS=Arabidopsis thalian... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_026E06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T7_E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886998 ID=CV886998; Name=CV886998; organism=Citrus sinensis; type=EST; length=917bp
TTTTTTTTTTTTTTTTTAATGCATTAATTATATTTATACGGGAATTAATA
CGAGATTACAGTATCCTTGCTTTTCTTTATAATTATTGTTTATTGCCATA
AGCATATATATGGTGTATACAACAGGGTTTAATTTGCAACTTCTTTTGAT
AAGCAAGAACATAGGAAATTTATATTTAAGTCTTGCATTCAAAGAGACCA
AGCAGAGTGGAAGTAAGAAGGGCCTCCATACCCTTCTCTCACCATCCTCT
CCATGTCTTGTGCATCACATTCATTTGTCCCCGGCATTGTTTCTGTTGTA
TCCAGCTCCGAGTTGAAGTCATAGTACATACTTGCTGCTGAAAGCTTCAT
GGAGAGAAACTCAATTTGATTCTGCAGAGATCGAACATAATTAATAATAA
CATCCAACATCACTGCCATTCCCATTGTCTTGTAGCATCCTGGAACCAAG
TCCTGTAAGCATCTCAGCCTCTCATTTATTTTCTCTCTTCTCACCCTTTC
AGCCAAACTGTGACTGTCAGTGGCTTGACCTCTTTTTGCTCTTACATGAA
TCACTTCTTTTGGTTTCTCCACCACTCTCTCATTGTTTCTCTTTCTTTTT
CTTCCACTCAAGCCCTGCATGCCAGTTCCCTTATTATTTACACTTAACAA
CCCACTTCCAGAAGCCGGAGTGGGAGACAAATTCATAAAACTTTCAACAG
TATGCGCCGCCGCCTTCTTTCCGTTACTGGTATCATGGCTGAAATCAGCT
ATCAATCCTATGGAAGGAACAACTAAGGCTTCACTTTGAATGTTGTTATC
AGCAAAGCTCATGCAAAGCTGAGGCTGTTGATGATGATCAAAAAAGCTGC
CATTTGAGAAAAAACCCATGACTCCAGCAGGCTGATCATCAGATGTGTTA
CGATTCTCTAATGCCAT
back to top