EL492474

Overview
NameEL492474
Unique NameEL492474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length185
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6913 contig Csv1_Contig6913:1..185. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492474 vs. ExPASy Swiss-Prot
Match: R27A2_ARATH (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.880e-23
Identity = 46/56 (82.14%), Postives = 54/56 (96.43%), Query Frame = 3
Query:    3 GFFGKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDNVPMIDVTQFGYF 170
            G+FGKVGMRYFHKLRNKF CPIVN+DKLWS+VP++VKAK+SKDNVP+IDVTQ G+F
Sbjct:   51 GYFGKVGMRYFHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFF 106          
BLAST of EL492474 vs. ExPASy Swiss-Prot
Match: R27A3_ARATH (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.416e-23
Identity = 45/56 (80.36%), Postives = 54/56 (96.43%), Query Frame = 3
Query:    3 GFFGKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDNVPMIDVTQFGYF 170
            G+FGKVGMRYFHKLRNKF CPIVN+DKLWS+VP++VKAK++KDNVP+IDVTQ G+F
Sbjct:   51 GYFGKVGMRYFHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFF 106          
BLAST of EL492474 vs. ExPASy Swiss-Prot
Match: RL27A_OSCBR (60S ribosomal protein L27a OS=Oscheius brevesophaga GN=rpl-27a PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.213e-13
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 3
Query:    3 GFFGKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDNVPMIDVTQFGYF 170
            G+FGKVGMR FH  +N  +CP VNVD+LW++VP+E K K S +  P+ID  + GYF
Sbjct:   51 GYFGKVGMRVFHLNKNHHYCPTVNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYF 106          
BLAST of EL492474 vs. ExPASy Swiss-Prot
Match: RL27A_DICDI (60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.529e-13
Identity = 29/59 (49.15%), Postives = 46/59 (77.97%), Query Frame = 3
Query:    3 GFFGKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYF 170
            G+FGK+GMR+FH LRN++HCP V+++K+W++VP+ V+   +  N    P++DVTQ G+F
Sbjct:   51 GYFGKLGMRHFHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFF 109          
BLAST of EL492474 vs. ExPASy Swiss-Prot
Match: RL27A_TETTH (60S ribosomal protein L27a OS=Tetrahymena thermophila GN=RPL27A PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.751e-12
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 3
Query:    3 GFFGKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKD--NVPMIDVTQFGYF 170
            G++GK+GMR FH  +N  HCP+VN+DKLWS+V    + K ++D   VP+IDVT+ G+F
Sbjct:   53 GYYGKLGMRTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDKKKVPVIDVTKAGFF 110          
BLAST of EL492474 vs. ExPASy Swiss-Prot
Match: RL27A_RAT (60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.303e-11
Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 3
Query:    3 GFFGKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYF 170
            G+FGKVGMR++H  RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+
Sbjct:   51 GYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYY 109          
BLAST of EL492474 vs. ExPASy Swiss-Prot
Match: RL27A_MACFA (60S ribosomal protein L27a OS=Macaca fascicularis GN=RPL27A PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.303e-11
Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 3
Query:    3 GFFGKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYF 170
            G+FGKVGMR++H  RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+
Sbjct:   51 GYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYY 109          
BLAST of EL492474 vs. ExPASy Swiss-Prot
Match: RL27A_BOVIN (60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.303e-11
Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 3
Query:    3 GFFGKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYF 170
            G+FGKVGMR++H  RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+
Sbjct:   51 GYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYY 109          
BLAST of EL492474 vs. ExPASy Swiss-Prot
Match: RL27A_PONAB (60S ribosomal protein L27a OS=Pongo abelii GN=RPL27A PE=2 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.358e-11
Identity = 27/59 (45.76%), Postives = 43/59 (72.88%), Query Frame = 3
Query:    3 GFFGKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYF 170
            G+FGKVGM+++H  RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+
Sbjct:   51 GYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYY 109          
BLAST of EL492474 vs. ExPASy Swiss-Prot
Match: RL27A_PANTR (60S ribosomal protein L27a OS=Pan troglodytes GN=RPL27A PE=2 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.358e-11
Identity = 27/59 (45.76%), Postives = 43/59 (72.88%), Query Frame = 3
Query:    3 GFFGKVGMRYFHKLRNKFHCPIVNVDKLWSMVPQEVKAKASKDN---VPMIDVTQFGYF 170
            G+FGKVGM+++H  RN+  CP VN+DKLW++V ++ +  A+K+     P+IDV + GY+
Sbjct:   51 GYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYY 109          
The following BLAST results are available for this feature:
BLAST of EL492474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
R27A2_ARATH2.880e-2382.1460S ribosomal protein L27a-2 OS=Arabidopsis thalia... [more]
R27A3_ARATH6.416e-2380.3660S ribosomal protein L27a-3 OS=Arabidopsis thalia... [more]
RL27A_OSCBR1.213e-1355.3660S ribosomal protein L27a OS=Oscheius brevesophag... [more]
RL27A_DICDI3.529e-1349.1560S ribosomal protein L27a OS=Dictyostelium discoi... [more]
RL27A_TETTH1.751e-1251.7260S ribosomal protein L27a OS=Tetrahymena thermoph... [more]
RL27A_RAT3.303e-1147.4660S ribosomal protein L27a OS=Rattus norvegicus GN... [more]
RL27A_MACFA3.303e-1147.4660S ribosomal protein L27a OS=Macaca fascicularis ... [more]
RL27A_BOVIN3.303e-1147.4660S ribosomal protein L27a OS=Bos taurus GN=RPL27A... [more]
RL27A_PONAB7.358e-1145.7660S ribosomal protein L27a OS=Pongo abelii GN=RPL2... [more]
RL27A_PANTR7.358e-1145.7660S ribosomal protein L27a OS=Pan troglodytes GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC0920 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0920, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492474 ID=EL492474; Name=EL492474; organism=Citrus sinensis; type=EST; length=185bp
TCGGGTTTTTCGGCAAAGTCGGTATGAGGTACTTCCACAAACTGCGTAAT
AAATTTCATTGCCCAATTGTGAACGTCGACAAGCTTTGGTCGATGGTACC
TCAGGAGGTCAAAGCCAAGGCTTCCAAAGACAATGTGCCAATGATCGATG
TGACTCAGTTTGGCTACTTTACTCAGGACTCATCA
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