CV886992

Overview
NameCV886992
Unique NameCV886992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 436.802 bits (1122), Expect = 7.850e-122
Identity = 208/241 (86.31%), Postives = 221/241 (91.70%), Query Frame = -3
Query:  176 AVFRPCASKSRFLTGSSGKLNREVALKPVSSSA---SFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 889
            ++FRPC SK RFLTGSSG+LNR+++   + SSA   SFKVEAKKGEWLPGLASP YL GSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTKIGIIN P+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP  EVGYPGGIFNPLNFAPT EAKEKELANGRLAMLAFLGF+VQHNVTGKGPFENLLQH+SDPWHNTIVQT +
Sbjct:   11 SIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTFN 251          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 436.032 bits (1120), Expect = 1.339e-121
Identity = 212/242 (87.60%), Postives = 220/242 (90.91%), Query Frame = -3
Query:  170 AVFRPCASKSRFLTGSSGKLNREVALKPV--SSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSGN 889
            A+F PC  KSRFL GSSGKLNR VA +PV  S SASFKVEAKKGEWLPGLASP YL GSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFT IGIIN P+WY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP  EVGYPGGIFNPLNFAPT EAKEKE+ANGRLAMLAFLGFI+QHNVTGKGPF+NLLQHISDPWHNTIVQTL GN
Sbjct:   11 AIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGGN 252          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 3.445e-85
Identity = 158/238 (66.39%), Postives = 181/238 (76.05%), Query Frame = -3
Query:  173 FRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDA-GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSG 883
            FR     S   +GS     R+VA++             KG WLPGL SP YL+GSL GDNGFDPL LAEDPE+L+W+VQA++VN RWAMLGV GML+PEV TK G++NAP+W    GK  YFASSST   +  +   YVEIRRWQDIKNPGSVNQDPIFK YSLPP+E GYPG +FNPLNFAP  E KEKELANGRLAMLAFLGF+VQHNV GKGPFENL QH++DPWHNTI+QT+SG
Sbjct:    7 FRTRVPPSPAASGSPRSTRRDVAVQA------------KGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAPL-ENKEKELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTISG 230          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.722e-60
Identity = 120/242 (49.59%), Postives = 154/242 (63.64%), Query Frame = -3
Query:  176 ASKSRFLTGSSGKLNREVALKPVSSSA----SFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF-----APTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 871
            A+K+ FL G   ++++ +A  PV S +    +   +  +  W PG   P +L+GSLPGD GFDPLGL  DPE+LKW  QAELV+SRWAMLG  G+ +PE  TKIG++N P WY AG+ EYF  ++TLFVIE +L  + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL +     A   E + KE+ NGRLAMLA +G   QH  TG GP +NL  H++DP H TI    S
Sbjct:   29 ATKASFLGGKRLRVSKFIA--PVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.240e-59
Identity = 116/239 (48.54%), Postives = 150/239 (62.76%), Query Frame = -3
Query:  176 SKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGE--WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF-----APTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLS 868
            +K+ FL G   ++++        S+ +  V A      W PG   P +L+GSLPGD GFDPLGLA DPE+L+W  QAELV+ RWAMLG  G+ +PE+ TKIGI+N P WY AG+ EYF  ++TLF++E +L  + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL +     A   E + KE+ NGRLAMLA +G   QH  TG GP +NL  H++DP H TI    S
Sbjct:   30 TKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.159e-38
Identity = 98/235 (41.70%), Postives = 131/235 (55.74%), Query Frame = -3
Query:  179 SSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP-------PNEVGYPGG-IFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTL 802
            +S+   K  A +  W     S +YL+G LPGD GFDPLGL+ DPE        KW    E++N R+AMLG  G + PE+  K G+I    A  W+       AG   Y+A + TLFV+E  L  + E RR+QD   PGS+      KQY L          +  YPGG +FNPL F   +    E K KE+ NGRLAMLA LG+ +Q  VTG GP++NLL H++DP +N ++ +L
Sbjct:   42 ASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSL 270          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.389e-38
Identity = 96/221 (43.44%), Postives = 125/221 (56.56%), Query Frame = -3
Query:  179 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGII---NAPQWYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP-------PNEVGYPGG-IFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTL 760
            W     S +YL+GSLPGD GFDPLGL+ DPE        +W    E++N R+AMLG VG + PE   K+G+I    A  W+       AG   Y+A + TLFV+E  L  + E RR+QD   PGS+      KQY L             YPGG  FNPL F   +    E K KE+ NGRLAMLA LG+ +Q  VTG GP++NLL H++DP +N ++ +L
Sbjct:   58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSL 272          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.242e-34
Identity = 86/204 (42.16%), Postives = 116/204 (56.86%), Query Frame = -3
Query:  191 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFENLLQHISDPWHNTI 763
            EW PG   P +L+GS PGD GFDPLGLA  PEN + + ++E+ + RWAML V G+L+PE       + A +W     G+A Y      + +  T+  IEF+   + E +R        ++ +DP  K+         YPGG F+PL F    A  +E K KE+ NGRLAMLAF+GF VQ +   G GP ENL  H++DPWHN I
Sbjct:   47 EWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR--------TMEKDPEKKK---------YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.623e-34
Identity = 84/204 (41.18%), Postives = 117/204 (57.35%), Query Frame = -3
Query:  191 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAKEKELANGRLAMLAFLGFIVQHNV-TGKGPFENLLQHISDPWHNTI 763
            +W+PG   P+YL+GS PGD GFD LGL E P NL+ Y ++EL++ RWAML V G+++PE       + A +W     G+A Y      + +  T+  IEF+   +VE +R        S+ +D   K+         YPGG F+PL +    A  +E K KE+ NGRLA+LA +GF VQ +   G GP ENL  H++DPWHN I
Sbjct:   48 DWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKDSEKKK---------YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234          
BLAST of CV886992 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.269e-28
Identity = 75/204 (36.76%), Postives = 107/204 (52.45%), Query Frame = -3
Query:  173 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINAPQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTLSG 739
            P YLNG + GD G+DP GL + PEN   Y   EL+++RWAMLG  G ++PE   K G    P+  W+       D     YF  +  + ++  ++   V +    +  I N G   +D +            +PGG F+PL  A   E     K KE+ NGRLAM A LGF +Q  VTG+GP ENL +H+SDP+ N ++  ++G
Sbjct:   82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITN-GLDFEDKL------------HPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAG 272          
The following BLAST results are available for this feature:
BLAST of CV886992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB24_ARATH7.850e-12286.31Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA1.339e-12187.60Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB120_HORVU3.445e-8566.39Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB12_PETHY1.722e-6049.59Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC4.240e-5948.54Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB13_SOLLC3.159e-3841.70Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA5.389e-3843.44Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU1.242e-3442.16Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.623e-3441.18Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB26_ARATH2.269e-2836.76Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026E02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T7_E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886992 ID=CV886992; Name=CV886992; organism=Citrus sinensis; type=EST; length=891bp
TTTTTTTTTTTTTTTTTGGTGTAAATGATAATATAAATACCATCATAGTT
CCCCTGTACATTGAGAGTTTCCATGTTTACATTGATGCTCAAATCTCACT
CAAAAACTACAGATTCATGGTTACAAAAGAAAGAAACAGGATCCGGGATG
GCCAATCCATCTTTGATTAATTACCACTTAGTGTCTGGACGATGGTGTTG
TGCCATGGGTCAGAGATGTGTTGCAGGAGGTTTTCAAATGGCCCTTTGCC
TGTCACATTGTGCTGAACAATAAATCCCAAGAATGCCAACATTGCCAATC
TCCCATTGGCAAGCTCCTTCTCCTTTGCCTCGTCAGTGGGTGCAAAGTTG
AGTGGGTTGAAGATGCCACCGGGGTACCCAACTTCGTTTGGAGGCAAGCT
GTACTGCTTGAAAATGGGGTCTTGGTTGACACTTCCTGGGTTCTTTATGT
CTTGCCATCTTCTTATCTCCACATAGTGGAACAAGATGAACTCGATCACG
AAAAGGGTCGATGATGATGCAAAGTACTCAGCCTTCCCAGCATCATACCA
TTGAGGAGCATTAATAATTCCAATCTTTGTGAAAACTTCGGGCAACAACA
TTCCAACAACCCCCAACATGGCCCAGCGCGAATTCACAAGCTCGGCTTGC
ACATACCACTTCAAGTTCTCAGGATCCTCGGCAAGCCCCAAGGGGTCAAA
TCCATTGTCACCGGGGAGGCTGCCGTTGAGGTAAGTTGGCGAGGCCAAGC
CCGGTAACCACTCCCCCTTCTTGGCTTCAACTTTGAAAGAAGCGCTTGAG
CTCACTGGTTTCAAGGCCACTTCCCTGTTTAATTTACCCGAAGACCCAGT
AAGGAACCTGGATTTGGATGCGCATGGCCGGAACACGGCGG
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