CV886990

Overview
NameCV886990
Unique NameCV886990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886990 vs. ExPASy Swiss-Prot
Match: HDDC2_HUMAN (HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.742e-41
Identity = 85/160 (53.12%), Postives = 116/160 (72.50%), Query Frame = -1
Query:  106 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 579
            + FL L  +LK   R GWV RNV  PES++DHMYRM +M +++ D   +++D+C+++A+VHD+AE IVGDI P+D IPKEEK +RE EA+  + +LL +  R KE+ ELW EYE  S+AEAK VK  D+ EMILQA EYE+ + K   L++F+ STAGKF
Sbjct:   18 LQFLRLVGQLKRVPRTGWVYRNVQRPESVSDHMYRMAVMAMVIKD-DRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKF 175          
BLAST of CV886990 vs. ExPASy Swiss-Prot
Match: HDDC2_BOVIN (HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.620e-41
Identity = 83/160 (51.88%), Postives = 115/160 (71.88%), Query Frame = -1
Query:  106 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 579
            + FL L  +LK   R GWV RNV  PES++DHMYRM +M L+  D   +++D+C+++A+VHD+AE IVGDI P+D +P+EEK +RE EA+  + +LL +  + KE+ ELW EYE  S+AEAK VK  D+ EMILQA EYE+ + K   L++F+ STAGKF
Sbjct:   19 LQFLRLVGQLKRVPRTGWVYRNVQKPESVSDHMYRMAVMALVTKD-EHLNKDRCVRLALVHDMAECIVGDIAPADNVPREEKHRREEEAMKQLTQLLPEDLQ-KELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKF 176          
BLAST of CV886990 vs. ExPASy Swiss-Prot
Match: HDDC2_MOUSE (HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.646e-41
Identity = 85/158 (53.80%), Postives = 113/158 (71.52%), Query Frame = -1
Query:  106 FLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 573
            FL L  +LK   R GWV RNV  PES++DHMYRM +M ++  D   +++D+CI++A+VHD+AE IVGDI P+D IPKEEK +RE EA+  + +LL +  R KE+ ELW EYE  S+ EAK VK  D+ EMILQA EYE+ + K   L++F+ STAGKF
Sbjct:   15 FLRLVGQLKRVPRTGWVYRNVEKPESVSDHMYRMAVMAMVTRD-DRLNKDRCIRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSEEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKF 170          
BLAST of CV886990 vs. ExPASy Swiss-Prot
Match: HDDC2_DANRE (HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.129e-40
Identity = 90/197 (45.69%), Postives = 125/197 (63.45%), Query Frame = -1
Query:   19 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKFQ--------TELGKAWAAEIVSRRKK*TNFHKKTLVK 579
            + F+ L  +LK   R GWV RN+  PES++DHMYRM +M L + DI  +++++C+K+A+VHD+AE IVGDI P+D + K EK +RE++A+ ++  LL  G R KEI  LW EYE  S+ EAK+VK+ D  EMI+QA EYE  +GK   L+EFF ST GKF           L +  A  I +  +K T+    TL K
Sbjct:    5 LQFMKLVGQLKRVPRTGWVYRNIKQPESVSDHMYRMSMMALTIQDI-SVNKERCMKLALVHDLAECIVGDIAPADNVSKAEKHRREKDAMVHITGLLDDGLR-KEIYNLWEEYETQSSPEAKLVKELDNLEMIIQAHEYEELEGKPGRLQEFFVSTEGKFHHPEVLGLLKSLNEERARHIAAGGEKTTDTDSLTLAK 199          
BLAST of CV886990 vs. ExPASy Swiss-Prot
Match: HDDC2_DICDI (HD domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=hddc2 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.291e-40
Identity = 94/187 (50.27%), Postives = 115/187 (61.50%), Query Frame = -1
Query:   55 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMG-------LIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYEN-----EQGKDLEEFFQSTAGKFQTELGKAWAAEIVSRRK 579
            ++F  +C +LKT KR GWV   V  PES++DHMYRM +MG       LI  D   ID+ K IKMA+VHD+ E++VGD TP D I KEEK Q E+ AI  +   L  G   KEI +LW EYE+  T EA +VKDFDK EMILQA EYE      E    L+ FF ST GKF   L K+ A ++ S RK
Sbjct:    5 LEFFKICGKLKTLKRTGWVNHGVELPESVSDHMYRMAMMGMCLDKKELIGEDGKEIDKMKIIKMALVHDLGESLVGDFTPHDKITKEEKYQLEKNAIIEITNTL-SGEVGKEIFDLWQEYEDCKTNEALLVKDFDKFEMILQAYEYEKQPHQLENKIKLQSFFDSTRGKFHHPLFKSLALQLESDRK 190          
BLAST of CV886990 vs. ExPASy Swiss-Prot
Match: YC0H_SCHPO (HD domain-containing protein C4G3.17 OS=Schizosaccharomyces pombe GN=SPCC4G3.17 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.947e-38
Identity = 87/182 (47.80%), Postives = 118/182 (64.84%), Query Frame = -1
Query:   52 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREA---ITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQG--KDLEEFFQSTAGK-FQTELGKAWAAEIVSRRKK 579
            + FL    RLKTT R GW+   +  PESIADHMYRMG++ ++  D P I++++C+K+A+VHD+AE+IVGDITP + + KEEK + E EA   IT     L    +A+EI EL++EYE  ST EAK VKD DK EMI Q  EYE +    KDL +F  + AGK  Q  L K W  +++  R++
Sbjct:   10 VPFLDCLSRLKTTPRTGWLYHGIEKPESIADHMYRMGILTMLCND-PSINKERCLKIAVVHDMAESIVGDITPHENVSKEEKHRMESEAMVSITQQLIPLNLSLQAEEIKELFLEYESASTPEAKFVKDIDKFEMIAQMFEYERKFNGEKDLSQF--TWAGKLIQHPLVKGWLNDVLQEREQ 188          
BLAST of CV886990 vs. ExPASy Swiss-Prot
Match: HDDC2_XENLA (HD domain-containing protein 2 OS=Xenopus laevis GN=hddc2 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.947e-38
Identity = 76/161 (47.20%), Postives = 113/161 (70.19%), Query Frame = -1
Query:  103 IDFLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKFQ 579
            + F+ L  +LK   R GW+ R V  PES++DHMYRM +M ++  D   +++D+CI++A+VHD+AE IVGDI P+D I KEEK ++E+ A+ ++ +LL    +  E+ +LW EYE   TAEAK VK+ D+ EMILQA+EYE  + +   L++F+ STAGKF+
Sbjct:   15 LQFMKLVGQLKRVPRTGWIYRQVEKPESVSDHMYRMAVMAMLTEDRK-LNKDRCIRLALVHDMAECIVGDIAPADNIAKEEKHRKEKAAMEHLTQLLPDNLKT-EVYDLWEEYEHQFTAEAKFVKELDQCEMILQALEYEELEKRPGRLQDFYNSTAGKFK 173          
BLAST of CV886990 vs. ExPASy Swiss-Prot
Match: YB92_YEAST (HD domain-containing protein YBR242W OS=Saccharomyces cerevisiae GN=YBR242W PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.595e-34
Identity = 76/179 (42.46%), Postives = 118/179 (65.92%), Query Frame = -1
Query:   52 FLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLL---GQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQ--GKDLEEFFQSTAGKFQTELGKAWAAEIVSRRKK 573
            FL++  +LK  +R G++   +   ESI+DHMYR+ ++ +++ D   ++RDKC+++A+VHDIAE++VGDITP D I KEEK +RE E I Y+C  L        AKEI + W+ YE  ++ EA+ VKD DK EM++Q  EYE E    K+ ++FF + A   +T+  K W +++V +R+K
Sbjct:   51 FLNVVQQLKIQRRTGYLDLGIKECESISDHMYRLSIITMLIKD-SRVNRDKCVRIALVHDIAESLVGDITPVDPIGKEEKHRREWETIKYLCNALIKPYNEIAAKEIMDDWLAYENVTSLEARYVKDIDKYEMLVQCFEYEREYKGTKNFDDFFGAVA-SIKTDEVKGWTSDLVVQRQK 227          
BLAST of CV886990 vs. ExPASy Swiss-Prot
Match: YGK1_YEAST (HD domain-containing protein YGL101W OS=Saccharomyces cerevisiae GN=YGL101W PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.838e-34
Identity = 73/178 (41.01%), Postives = 114/178 (64.04%), Query Frame = -1
Query:   55 FLSLCHRLKTTKRAGWVKRNVNNPESIADHMYRMGLMGLIMADIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLL---GQGARAKEIDELWMEYEENSTAEAKIVKDFDKAEMILQAVEYENEQG--KDLEEFFQSTAGKFQTELGKAWAAEIVSRRK 573
            FL++   LKT +R GWV   ++  ESI+DHMYRMGL  +++ D   +DR+KCI++A+VHD AE++VGDITP+D + KEEK +RE E + Y+C+ +      + ++EI + W+ YE+ +  E + VKD DK EM++Q  EYE +    KDL++F        +T+  K W   ++  R+
Sbjct:   32 FLNIIQLLKTQRRTGWVDHGIDPCESISDHMYRMGLTTMLITD-KNVDRNKCIRIALVHDFAESLVGDITPNDPMTKEEKHRREFETVKYLCESIIRPCSESASREILDDWLAYEKQTCLEGRYVKDIDKYEMLVQCFEYEQKYNGKKDLKQFL-GAINDIKTDEVKKWTQSLLEDRQ 207          
The following BLAST results are available for this feature:
BLAST of CV886990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HDDC2_HUMAN1.742e-4153.13HD domain-containing protein 2 OS=Homo sapiens GN=... [more]
HDDC2_BOVIN6.620e-4151.88HD domain-containing protein 2 OS=Bos taurus GN=HD... [more]
HDDC2_MOUSE8.646e-4153.80HD domain-containing protein 2 OS=Mus musculus GN=... [more]
HDDC2_DANRE1.129e-4045.69HD domain-containing protein 2 OS=Danio rerio GN=h... [more]
HDDC2_DICDI4.291e-4050.27HD domain-containing protein 2 homolog OS=Dictyost... [more]
YC0H_SCHPO8.947e-3847.80HD domain-containing protein C4G3.17 OS=Schizosacc... [more]
HDDC2_XENLA8.947e-3847.20HD domain-containing protein 2 OS=Xenopus laevis G... [more]
YB92_YEAST4.595e-3442.46HD domain-containing protein YBR242W OS=Saccharomy... [more]
YGK1_YEAST7.838e-3441.01HD domain-containing protein YGL101W OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026D11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T7_D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886990 ID=CV886990; Name=CV886990; organism=Citrus sinensis; type=EST; length=639bp
TGTCAAAACTATCTGAAATTTCACTAATGTCTTCTTATGAAAATTAGTTC
ACTTTTTTCTCCTTGAAACAATTTCTGCAGCCCAAGCTTTCCCCAATTCA
GTCTGAAACTTTCCAGCAGTTGACTGGAAAAACTCCTCCAAATCCTTCCC
TTGCTCATTTTCGTACTCTACCGCTTGAAGTATCATCTCCGCCTTGTCAA
AGTCCTTGACTATTTTGGCCTCTGCAGTAGAATTTTCTTCATACTCCATC
CACAACTCATCTATTTCCTTGGCTCTTGCCCCTTGTCCTAGTAGTTTGCA
CATGTAGGTTATAGCTTCTCGCTCTCGTTGACTCTTTTCTTCCTTTGGAA
TTCCATCTGAAGGGGTAATGTCCCCAACAATAGCTTCCGCAATGTCATGA
ACAATTGCCATCTTAATGCACTTGTCTCGGTCAATGCCAGGAATGTCAGC
CATAATGAGACCCATCAATCCCATTCTGTACATATGATCAGCTATCGATT
CTGGATTGTTAACATTTCTCTTTACCCATCCTGCTCTCTTCGTTGTCTTA
AGGCGGTGGCAGAGGGAGAGGAAGTCGATCGCGGACGAAGAGGAAGAAGA
GAAAGCAGCGCCGTTAACAGATGAGGAAGCGAGAGGCCT
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