CV886974

Overview
NameCV886974
Unique NameCV886974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886974 vs. ExPASy Swiss-Prot
Match: RL31_NICGU (60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.199e-47
Identity = 94/115 (81.74%), Postives = 101/115 (87.83%), Query Frame = 2
Query:   20 MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKV 364
            M +KTKGRKEEVVTRE+TINLHKRLH CTFKKKAP AIKEIRKFA+KAMGTKDVRVDVKLNKQIWSRGIRSVP+          NDDEDAKEELYSLVTVAEIP +GL+GLGTK+
Sbjct:    1 MSDKTKGRKEEVVTREYTINLHKRLHSCTFKKKAPTAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEIPAKGLKGLGTKI 115          
BLAST of CV886974 vs. ExPASy Swiss-Prot
Match: RL31_PANGI (60S ribosomal protein L31 OS=Panax ginseng GN=RPL31 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.325e-46
Identity = 93/115 (80.87%), Postives = 100/115 (86.96%), Query Frame = 2
Query:   20 MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKV 364
            MVEKTKGRKEEVVTRE+TINLHKRLHGCTFKKKAP AIKEIRKFA+KAMGTKDVRVDVKLNKQIWSRGIRSVP+          NDDEDAKEELYSLVTVA+IP   L+GLG ++
Sbjct:    1 MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAKIPAGTLKGLGPQI 115          
BLAST of CV886974 vs. ExPASy Swiss-Prot
Match: RL313_ARATH (60S ribosomal protein L31-3 OS=Arabidopsis thaliana GN=RPL31C PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.609e-44
Identity = 88/114 (77.19%), Postives = 96/114 (84.21%), Query Frame = 2
Query:   23 VEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKV 364
            + + KGRKEEV+TRE+TINLH+RLH CTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWS+GIR  P+          NDDEDAKEE +SLVTVAEIP EGL GLGTKV
Sbjct:    1 MSEKKGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKV 114          
BLAST of CV886974 vs. ExPASy Swiss-Prot
Match: RL31_PICMA (60S ribosomal protein L31 OS=Picea mariana GN=RPL31 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.713e-44
Identity = 84/115 (73.04%), Postives = 97/115 (84.35%), Query Frame = 2
Query:   20 MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKV 364
            MVEK K R+ EV TRE+TINLH+RLHGCTFKK APKA+KEIRKFA+KAMGT DVR+DVKLNK +WSRGIRSVP+          ND+EDAK+ELYS+VTVAE+PPEGL GLGTK+
Sbjct:    1 MVEKGKSRRNEVATREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKLNKAVWSRGIRSVPRRMRVRISRKRNDEEDAKDELYSIVTVAEVPPEGLTGLGTKI 115          
BLAST of CV886974 vs. ExPASy Swiss-Prot
Match: RL31_PERFR (60S ribosomal protein L31 OS=Perilla frutescens GN=RPL31 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.713e-44
Identity = 89/111 (80.18%), Postives = 96/111 (86.49%), Query Frame = 2
Query:   32 TKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKV 364
            +K RKEEVV+RE+TINLHKRLHGCTFKKKAPKAIKEIRKFA+KAMGT DVRVDVKLNK IWSRGIRSVP+          NDDEDAKEELYSLVTVAEIP  GL+GLGT+V
Sbjct:    6 SKPRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQV 116          
BLAST of CV886974 vs. ExPASy Swiss-Prot
Match: RL311_ARATH (60S ribosomal protein L31-1 OS=Arabidopsis thaliana GN=RPL31A PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.156e-44
Identity = 89/114 (78.07%), Postives = 95/114 (83.33%), Query Frame = 2
Query:   23 VEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKV 364
            +EK KGRKEEVVTRE+TINLH+RLH CTFKKKAP AIKEIRKFA KAMGTKDVRVDVKLNKQIWS+GIR  P+          NDDEDAKEE +SLVTVAEIP EGL GLGTKV
Sbjct:    1 MEKGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKV 114          
BLAST of CV886974 vs. ExPASy Swiss-Prot
Match: RL312_ARATH (60S ribosomal protein L31-2 OS=Arabidopsis thaliana GN=RPL31B PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.040e-44
Identity = 87/114 (76.32%), Postives = 95/114 (83.33%), Query Frame = 2
Query:   23 VEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKV 364
            + + KGRKEEVVTRE+TINLH+RLH CTFKKKAPKAIKEIRKFAEK MGTKDVRVDVKLNKQIWS+GIR  P+          NDDEDAKEE +SLVTVAEIP EGL GLGTK+
Sbjct:    1 MSEKKGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKI 114          
BLAST of CV886974 vs. ExPASy Swiss-Prot
Match: RL31_CYAPA (60S ribosomal protein L31 OS=Cyanophora paradoxa GN=RPL31 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 66/112 (58.93%), Postives = 81/112 (72.32%), Query Frame = 2
Query:   26 EKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTK 361
            E  K R  E+VTRE+TINLHKRLHG  FKK+AP+A+KEI+KFA K MGT DVRVD +LNK +W++GIRSVP           NDDEDAKE+LY+LVT   +P    +GL T+
Sbjct:    5 ENKKSRAAEIVTREYTINLHKRLHGVGFKKRAPRAVKEIKKFASKIMGTTDVRVDPRLNKFVWNQGIRSVPYRVRVRLARKRNDDEDAKEKLYTLVTY--VPVTSFKGLQTQ 114          
BLAST of CV886974 vs. ExPASy Swiss-Prot
Match: RL31_CHLRE (60S ribosomal protein L31 OS=Chlamydomonas reinhardtii GN=RPL31 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 68/112 (60.71%), Postives = 81/112 (72.32%), Query Frame = 2
Query:   29 KTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTKV 364
            K K R +E VTRE+TI+L KRLH  +FKK APKA+KEIRKFA K MGT DVR+DVKLNK +WS+GI++VP           NDDEDAKEE+YS VTVAE   +  +G GT V
Sbjct:    3 KDKSRSKEQVTREYTIHLSKRLHKTSFKKCAPKAVKEIRKFASKVMGTSDVRLDVKLNKAVWSKGIKNVPTRLRIVISRRRNDDEDAKEEMYSFVTVAE--DQSTKGKGTVV 112          
BLAST of CV886974 vs. ExPASy Swiss-Prot
Match: RL31_SPOFR (60S ribosomal protein L31 OS=Spodoptera frugiperda GN=RpL31 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.627e-28
Identity = 63/111 (56.76%), Postives = 80/111 (72.07%), Query Frame = 2
Query:   29 KTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXXNDDEDAKEELYSLVTVAEIPPEGLRGLGTK 361
            K K    EVVTRE+T+NLHKRLHG  FKK+AP+AIKEIRKFAEK MGT DVRVD +LNK +WS+G+R+VP           NDDED+  +L++LVT   +P   ++GL T+
Sbjct:    9 KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFLWSKGVRNVPFRVRVRLSRRRNDDEDSAHKLFTLVTY--VPVASIKGLQTE 117          
The following BLAST results are available for this feature:
BLAST of CV886974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL31_NICGU1.199e-4781.7460S ribosomal protein L31 OS=Nicotiana glutinosa G... [more]
RL31_PANGI1.325e-4680.8760S ribosomal protein L31 OS=Panax ginseng GN=RPL3... [more]
RL313_ARATH3.609e-4477.1960S ribosomal protein L31-3 OS=Arabidopsis thalian... [more]
RL31_PICMA4.713e-4473.0460S ribosomal protein L31 OS=Picea mariana GN=RPL3... [more]
RL31_PERFR4.713e-4480.1860S ribosomal protein L31 OS=Perilla frutescens GN... [more]
RL311_ARATH6.156e-4478.0760S ribosomal protein L31-1 OS=Arabidopsis thalian... [more]
RL312_ARATH8.040e-4476.3260S ribosomal protein L31-2 OS=Arabidopsis thalian... [more]
RL31_CYAPA2.966e-3058.9360S ribosomal protein L31 OS=Cyanophora paradoxa G... [more]
RL31_CHLRE2.966e-3060.7160S ribosomal protein L31 OS=Chlamydomonas reinhar... [more]
RL31_SPOFR1.627e-2856.7660S ribosomal protein L31 OS=Spodoptera frugiperda... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_026D01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T7_D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886974 ID=CV886974; Name=CV886974; organism=Citrus sinensis; type=EST; length=729bp
CTAAGGTGAAGAGAGAGAAATGGTGGAGAAGACCAAGGGACGAAAGGAGG
AGGTGGTGACCAGAGAGTTCACCATCAACCTTCACAAGCGTCTACATGGC
TGTACATTCAAGAAGAAAGCTCCAAAAGCCATTAAGGAGATCAGGAAATT
TGCAGAGAAAGCTATGGGCACTAAGGATGTTAGGGTTGATGTCAAATTGA
ACAAGCAAATCTGGAGCAGGGGCATCCGAAGTGTTCCAAAGAGGGTTAGG
GTTCGCATTGCTCGCAGGAGGAACGATGATGAAGACGCTAAGGAAGAGCT
GTACTCTCTTGTAACTGTTGCAGAAATCCCACCAGAAGGACTGAGGGGGC
TTGGCACCAAGGTACATGGTATTAATTGACTGGAATCTGGATGTGAAGTT
TTTTCTCCAGAAGGTTTTGCAAATAGGGCATCCTTGCATCTGGTGATGTT
TCAAGATCATTGCAGAAATTTTCTTTATGCAAAAATAGTAGTGCGCTGGA
AACAATGCTGAATGTTCCACAATAATAGCATTTTGAAGTTAAGTCATGTG
CCACAAGCAATAGGATTATTAGATATTTAAATTTCCAGGTTAGGGCTTAG
ACTGAGCAAGACTGATGTTTTGTTTAGGGCATATACTTCATTATTAGCGA
GATCTAGCTTCCAGCTAACTTTTATGAATAAACAGAACTAGCTCACTTTG
CAATAATAGTCAAAAAAAAAAAAAAACCT
back to top