CV886973

Overview
NameCV886973
Unique NameCV886973
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886973 vs. ExPASy Swiss-Prot
Match: RL31_NICGU (60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.227e-47
Identity = 95/115 (82.61%), Postives = 102/115 (88.70%), Query Frame = -3
Query:  363 MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKV 707
            M +KTKGRKEEVVTRE+TINLHKRLH CTFKKKAP AIKEIRKFA+KAMGTKDVRVDVKLNKQIWSRGIRSVP+         RNDDEDAKEELYSLVTVAEIP +GL+GLGTK+
Sbjct:    1 MSDKTKGRKEEVVTREYTINLHKRLHSCTFKKKAPTAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEIPAKGLKGLGTKI 115          
BLAST of CV886973 vs. ExPASy Swiss-Prot
Match: RL31_PANGI (60S ribosomal protein L31 OS=Panax ginseng GN=RPL31 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.356e-46
Identity = 94/115 (81.74%), Postives = 101/115 (87.83%), Query Frame = -3
Query:  363 MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKV 707
            MVEKTKGRKEEVVTRE+TINLHKRLHGCTFKKKAP AIKEIRKFA+KAMGTKDVRVDVKLNKQIWSRGIRSVP+         RNDDEDAKEELYSLVTVA+IP   L+GLG ++
Sbjct:    1 MVEKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAKIPAGTLKGLGPQI 115          
BLAST of CV886973 vs. ExPASy Swiss-Prot
Match: RL313_ARATH (60S ribosomal protein L31-3 OS=Arabidopsis thaliana GN=RPL31C PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.693e-44
Identity = 89/114 (78.07%), Postives = 97/114 (85.09%), Query Frame = -3
Query:  363 VEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKV 704
            + + KGRKEEV+TRE+TINLH+RLH CTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWS+GIR  P+         RNDDEDAKEE +SLVTVAEIP EGL GLGTKV
Sbjct:    1 MSEKKGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKV 114          
BLAST of CV886973 vs. ExPASy Swiss-Prot
Match: RL31_PICMA (60S ribosomal protein L31 OS=Picea mariana GN=RPL31 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.824e-44
Identity = 85/115 (73.91%), Postives = 98/115 (85.22%), Query Frame = -3
Query:  363 MVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKV 707
            MVEK K R+ EV TRE+TINLH+RLHGCTFKK APKA+KEIRKFA+KAMGT DVR+DVKLNK +WSRGIRSVP+         RND+EDAK+ELYS+VTVAE+PPEGL GLGTK+
Sbjct:    1 MVEKGKSRRNEVATREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKLNKAVWSRGIRSVPRRMRVRISRKRNDEEDAKDELYSIVTVAEVPPEGLTGLGTKI 115          
BLAST of CV886973 vs. ExPASy Swiss-Prot
Match: RL31_PERFR (60S ribosomal protein L31 OS=Perilla frutescens GN=RPL31 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.824e-44
Identity = 90/111 (81.08%), Postives = 97/111 (87.39%), Query Frame = -3
Query:  363 TKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKV 695
            +K RKEEVV+RE+TINLHKRLHGCTFKKKAPKAIKEIRKFA+KAMGT DVRVDVKLNK IWSRGIRSVP+         RNDDEDAKEELYSLVTVAEIP  GL+GLGT+V
Sbjct:    6 SKPRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQV 116          
BLAST of CV886973 vs. ExPASy Swiss-Prot
Match: RL311_ARATH (60S ribosomal protein L31-1 OS=Arabidopsis thaliana GN=RPL31A PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.300e-44
Identity = 90/114 (78.95%), Postives = 96/114 (84.21%), Query Frame = -3
Query:  363 VEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKV 704
            +EK KGRKEEVVTRE+TINLH+RLH CTFKKKAP AIKEIRKFA KAMGTKDVRVDVKLNKQIWS+GIR  P+         RNDDEDAKEE +SLVTVAEIP EGL GLGTKV
Sbjct:    1 MEKGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKV 114          
BLAST of CV886973 vs. ExPASy Swiss-Prot
Match: RL312_ARATH (60S ribosomal protein L31-2 OS=Arabidopsis thaliana GN=RPL31B PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.228e-44
Identity = 88/114 (77.19%), Postives = 96/114 (84.21%), Query Frame = -3
Query:  363 VEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKV 704
            + + KGRKEEVVTRE+TINLH+RLH CTFKKKAPKAIKEIRKFAEK MGTKDVRVDVKLNKQIWS+GIR  P+         RNDDEDAKEE +SLVTVAEIP EGL GLGTK+
Sbjct:    1 MSEKKGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKI 114          
BLAST of CV886973 vs. ExPASy Swiss-Prot
Match: RL31_CYAPA (60S ribosomal protein L31 OS=Cyanophora paradoxa GN=RPL31 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.035e-30
Identity = 67/112 (59.82%), Postives = 82/112 (73.21%), Query Frame = -3
Query:  366 EKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXRNDDEDAKEELYSLVTVAEIPPEGLRGLGTK 701
            E  K R  E+VTRE+TINLHKRLHG  FKK+AP+A+KEI+KFA K MGT DVRVD +LNK +W++GIRSVP          RNDDEDAKE+LY+LVT   +P    +GL T+
Sbjct:    5 ENKKSRAAEIVTREYTINLHKRLHGVGFKKRAPRAVKEIKKFASKIMGTTDVRVDPRLNKFVWNQGIRSVPYRVRVRLARKRNDDEDAKEKLYTLVTY--VPVTSFKGLQTQ 114          
BLAST of CV886973 vs. ExPASy Swiss-Prot
Match: RL31_CHLRE (60S ribosomal protein L31 OS=Chlamydomonas reinhardtii GN=RPL31 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.035e-30
Identity = 69/112 (61.61%), Postives = 82/112 (73.21%), Query Frame = -3
Query:  363 KTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXRNDDEDAKEELYSLVTVAEIPPEGLRGLGTKV 698
            K K R +E VTRE+TI+L KRLH  +FKK APKA+KEIRKFA K MGT DVR+DVKLNK +WS+GI++VP          RNDDEDAKEE+YS VTVAE   +  +G GT V
Sbjct:    3 KDKSRSKEQVTREYTIHLSKRLHKTSFKKCAPKAVKEIRKFASKVMGTSDVRLDVKLNKAVWSKGIKNVPTRLRIVISRRRNDDEDAKEEMYSFVTVAE--DQSTKGKGTVV 112          
BLAST of CV886973 vs. ExPASy Swiss-Prot
Match: RL31_SPOFR (60S ribosomal protein L31 OS=Spodoptera frugiperda GN=RpL31 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.275e-28
Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = -3
Query:  366 REKMVEKTKGRKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKXXXXXXXXXRNDDEDAKEELYSLVTVAEIPPEGLRGLGTK 716
            + K   K K    EVVTRE+T+NLHKRLHG  FKK+AP+AIKEIRKFAEK MGT DVRVD +LNK +WS+G+R+VP          RNDDED+  +L++LVT   +P   ++GL T+
Sbjct:    3 KPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDVRVDTRLNKFLWSKGVRNVPFRVRVRLSRRRNDDEDSAHKLFTLVTY--VPVASIKGLQTE 117          
The following BLAST results are available for this feature:
BLAST of CV886973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL31_NICGU1.227e-4782.6160S ribosomal protein L31 OS=Nicotiana glutinosa G... [more]
RL31_PANGI1.356e-4681.7460S ribosomal protein L31 OS=Panax ginseng GN=RPL3... [more]
RL313_ARATH3.693e-4478.0760S ribosomal protein L31-3 OS=Arabidopsis thalian... [more]
RL31_PICMA4.824e-4473.9160S ribosomal protein L31 OS=Picea mariana GN=RPL3... [more]
RL31_PERFR4.824e-4481.0860S ribosomal protein L31 OS=Perilla frutescens GN... [more]
RL311_ARATH6.300e-4478.9560S ribosomal protein L31-1 OS=Arabidopsis thalian... [more]
RL312_ARATH8.228e-4477.1960S ribosomal protein L31-2 OS=Arabidopsis thalian... [more]
RL31_CYAPA3.035e-3059.8260S ribosomal protein L31 OS=Cyanophora paradoxa G... [more]
RL31_CHLRE3.035e-3061.6160S ribosomal protein L31 OS=Chlamydomonas reinhar... [more]
RL31_SPOFR1.275e-2855.5660S ribosomal protein L31 OS=Spodoptera frugiperda... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026D01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T3_D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886973 ID=CV886973; Name=CV886973; organism=Citrus sinensis; type=EST; length=739bp
TTTTTTTTTTTTTTTGACTATTATTGCAAAGTGAGCTAGTTCTGTTTATT
CATAAAAGTTAGCTGGAAGCTAGATCTCGCTAATAATGAAGTATATGCCC
TAAACAAAACATCAGTCTTGCTCAGTCTAAGCCCTAACCTGGAAATTTAA
ATATCTAATAATCCTATTGCTTGTGGCACATGACTTAACTTCAAAATGCT
ATTATTGTGGAACATTCAGCATTGTTTCCAGCGCACTACTATTTTTGCAT
AAAGAAAATTTCTGCAATGATCTTGAAACATCACCAGATGCAAGGATGCC
CTATTTGCAAAACCTTCTGGAGAAAAAACTTCACATCCAGATTCCAGTCA
ATTAATACCATGTACCTTGGTGCCAAGCCCCCTCAGTCCTTCTGGTGGGA
TTTCTGCAACAGTTACAAGAGAGTACAGCTCTTCCTTAGCGTCTTCATCA
TCGTTCCTCCTGCGAGCAATGCGAACCCTAACCCTCTTTGGAACACTTCG
GATGCCCCTGCTCCAGATTTGCTTGTTCAATTTGACATCAACCCTAACAT
CCTTAGTGCCCATAGCTTTCTCTGCAAATTTCCTGATCTCCTTAATGGCT
TTTGGAGCTTTCTTCTTGAATGTACAGCCATGTAGACGCTTGTGAAGGTT
GATGGTGAACTCTCTGGTCACCACCTCCTCCTTTCGTCCCTTGGTCTTCT
CCACCATTTTCTCTCTCTTTCACCTTTAGGGGTTTCAAA
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