CV886960

Overview
NameCV886960
Unique NameCV886960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSF30_SOLPE (Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.568e-74
Identity = 128/164 (78.05%), Postives = 149/164 (90.85%), Query Frame = 2
Query:  380 PLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            P+EGLHD GPPPFL+KTYEMVED STD ++SWS TRNSFIVWDSH+FSTTLLP++FKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR+V QSM Q+G  AC+E+G YG++ ELERLKRD+NVLM EIV+LRQ QQ +R+Q+ AM +++
Sbjct:   20 PMEGLHDVGPPPFLSKTYEMVEDSSTDQVISWSTTRNSFIVWDSHKFSTTLLPRFFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRNVGQSMNQQGSGACIEIGYYGMEEELERLKRDKNVLMTEIVKLRQQQQSTRNQIIAMGEKI 183          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSFA2_ARATH (Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 9.514e-72
Identity = 135/204 (66.18%), Postives = 163/204 (79.90%), Query Frame = 2
Query:  272 MEGVRVK-EEETVTYXXXXXXXXXXXXXXXXXNFMPQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVS-QSMQQRG-GEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRLL 874
            ME ++V+ EEETVT+                 +  P+P+EGL++ GPPPFLTKTYEMVED +TD +VSWS  RNSF+VWDSH+FSTTLLP+YFKHSNFSSFIRQLNTYGFRK+DPDRWEFANEGFL GQKHLLK IKRRR++  Q++ Q+G G +C+EVGQYG DGE+ERLKRD  VL+AE+VRLRQ Q  S+ Q++AME RLL
Sbjct:    1 MEELKVEMEEETVTFTGSVAASSSVGS-----SSSPRPMEGLNETGPPPFLTKTYEMVEDPATDTVVSWSNGRNSFVVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMSCVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLL 199          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA2C_ORYSJ (Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 3.278e-64
Identity = 111/168 (66.07%), Postives = 141/168 (83.93%), Query Frame = 2
Query:  374 PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQS--MQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            P+P+EGLH+ GPPPFLTKTY++VED +TD +VSWSR  NSF+VWD H F+  LLP+ FKH+NFSSF+RQLNTYGFRKVDPDRWEFANEGFL GQ+HLLKTIKRR+  S +   QQ+   +CLEVG++G + E++RLKRD+N+L+ E+V+LRQ QQ ++D + AMEDRL
Sbjct:   29 PRPMEGLHEVGPPPFLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKTIKRRKPPSNAPPSQQQSLTSCLEVGEFGFEEEIDRLKRDKNILITEVVKLRQEQQATKDHVKAMEDRL 196          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA2B_ORYSJ (Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.245e-63
Identity = 114/169 (67.46%), Postives = 137/169 (81.07%), Query Frame = 2
Query:  374 PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR---HVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            P+P+EGLHDAGPPPFLTKTY+MV+D  TDA VSWS T NSF+VWD H F+T LLP++FKH+NFSSF+RQLNTYGFRKVDPDRWEFANE FL GQ+HLLK IKRR+   H + + Q  G    LEVG +G D E++RLKRD+ +LMAE+V+LRQ QQ ++  L AMEDRL
Sbjct:   39 PRPMEGLHDAGPPPFLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANENFLRGQRHLLKNIKRRKPPSHTASNQQSLG--PYLEVGHFGYDAEIDRLKRDKQLLMAEVVKLRQEQQNTKANLKAMEDRL 205          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA2E_ORYSJ (Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.054e-62
Identity = 108/166 (65.06%), Postives = 138/166 (83.13%), Query Frame = 2
Query:  374 PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            P+P++GL D GPPPFLTKTY+MV+D +TDA+VSWS T NSF+VWD H F   LLP+YFKH+NFSSF+RQLNTYGFRKVDPD+WEFANEGFL GQKHLLK+IKRR+  + S  Q+   + LEVG +G +GE+++LKRD+++LMAE+V+LRQ QQ ++  L AME +L
Sbjct:   25 PRPMDGLADGGPPPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRKPPNSSPSQQSLGSFLEVGHFGYEGEIDQLKRDKHLLMAEVVKLRQEQQNTKSDLQAMEQKL 190          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA6B_ARATH (Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.392e-61
Identity = 109/175 (62.29%), Postives = 141/175 (80.57%), Query Frame = 2
Query:  374 PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQSMQQRGGEA---------CLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            PQPLEGLH++GPPPFLTKTY++VED  T+ +VSWS++ NSFIVWD   FS TLLP++FKH+NFSSF+RQLNTYGFRKV+PDRWEFANEGFL GQKHLLK I+RR+  + S Q +  ++         C+EVG+YGLDGE++ L+RD+ VLM E+VRLRQ QQ ++  L+ +E++L
Sbjct:   48 PQPLEGLHESGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSEQQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKL 222          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA2D_ORYSJ (Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 1.683e-60
Identity = 106/169 (62.72%), Postives = 137/169 (81.07%), Query Frame = 2
Query:  374 PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRRHVSQ---SMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            P+P+EGLH+ GPPPFLTKT+++V D +TD +VSW R  +SF+VWD H F+   LP++FKH+NFSSF+RQLNTYGFRK+DPDRWEFAN+GFL GQ+HLLK IKRRR +S    S Q  G   CLEVGQ+GLD E++RLKRD+N+L+AE+V+LR  QQ ++  + AME+RL
Sbjct:   24 PRPMEGLHEVGPPPFLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVFLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWEFANDGFLRGQRHLLKMIKRRRPLSYLPGSQQALG--TCLEVGQFGLDEEIDRLKRDKNILLAEVVKLRHKQQSTKANMRAMEERL 190          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HFA2A_ORYSJ (Heat stress transcription factor A-2a OS=Oryza sativa subsp. japonica GN=HSFA2A PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.871e-60
Identity = 110/179 (61.45%), Postives = 138/179 (77.09%), Query Frame = 2
Query:  371 MPQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR------------HVSQSMQQRGGEACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            +P+P+EGL +AGPPPFL KTYE+V+D  TD ++SW    NSF+VWD++ F+  LLP+YFKHSNFSSF+RQLNTYGFRKVDPDRWEFANEGFL G+K LLKTIKRRR              S   QQ+   ACLEVGQ+G DG + RL+RD++VL+AE+V+LRQ QQ +R Q+ AME+R+
Sbjct:   39 LPRPMEGLGEAGPPPFLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGKKELLKTIKRRRPPPSSPPSSSSSSSSSQHQQQPAAACLEVGQFGRDGVVNRLQRDKSVLIAEVVKLRQEQQTTRAQMQAMEERI 217          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.129e-56
Identity = 112/184 (60.87%), Postives = 132/184 (71.74%), Query Frame = 2
Query:  374 PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR--------------HVSQSMQQRGGE----ACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            P P+   +   PPPFL KTY+MV+D STD IVSWS T NSF+VWD  +F+  LLPKYFKH+NFSSF+RQLNTYGFRKVDPDRWEFANEGFL GQKHLLK+I RR+              H  Q MQ  G      AC+EVG++GL+ E+ERLKRD+NVLM E+VRLRQ QQ + +QL  M  RL
Sbjct:   30 PAPMPSAN--APPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGHAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQGMVQRL 211          
BLAST of CV886960 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.515e-56
Identity = 111/184 (60.33%), Postives = 131/184 (71.20%), Query Frame = 2
Query:  374 PQPLEGLHDAGPPPFLTKTYEMVEDLSTDAIVSWSRTRNSFIVWDSHQFSTTLLPKYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLGGQKHLLKTIKRRR----HVSQSMQQRGGE--------------ACLEVGQYGLDGELERLKRDRNVLMAEIVRLRQHQQQSRDQLSAMEDRL 871
            P P+   +   PPPFL KTY+MV+D STD IVSWS T NSF+VWD  +F+  LLPKYFKH+NFSSF+RQLNTYGFRKVDPDRWEFANEGFL GQKHLLK+I RR+    H  Q  Q  G                AC+EVG++GL+ E+ERLKRD+NVLM E+VRLRQ QQ + +QL  M  RL
Sbjct:   28 PAPIPSAN--APPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQGMVQRL 209          
The following BLAST results are available for this feature:
BLAST of CV886960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HSF30_SOLPE1.568e-7478.05Heat shock factor protein HSF30 OS=Solanum peruvia... [more]
HSFA2_ARATH9.514e-7266.18Heat stress transcription factor A-2 OS=Arabidopsi... [more]
HFA2C_ORYSJ3.278e-6466.07Heat stress transcription factor A-2c OS=Oryza sat... [more]
HFA2B_ORYSJ1.245e-6367.46Heat stress transcription factor A-2b OS=Oryza sat... [more]
HFA2E_ORYSJ1.054e-6265.06Heat stress transcription factor A-2e OS=Oryza sat... [more]
HFA6B_ARATH3.392e-6162.29Heat stress transcription factor A-6b OS=Arabidops... [more]
HFA2D_ORYSJ1.683e-6062.72Heat stress transcription factor A-2d OS=Oryza sat... [more]
HFA2A_ORYSJ2.871e-6061.45Heat stress transcription factor A-2a OS=Oryza sat... [more]
HSF8_SOLPE1.129e-5660.87Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HSF8_SOLLC2.515e-5660.33Heat shock factor protein HSF8 OS=Solanum lycopers... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026C04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T3_C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886960 ID=CV886960; Name=CV886960; organism=Citrus sinensis; type=EST; length=878bp
CTGACCCACATCTGACAAATGGCGGAAAGCTTCGAAGAATTTCGGAAGAA
CCTGCCACATAACAGATGATCTCTTTATCTGGAACCTTCTCTTCCACCCT
CTTATAATCCTAAATTCGCTGCCACACTTAGACTCGACACTCAAATCTCC
CCTGGAGATCTTACTGAAAAATTACAATCAAGTCCGTAAACAACTCAAAA
TTCGTACTAAAGCCTACTGAAAGCTCGCTTAATTAATAACTCTCTGTTTA
AAACCTATATTAGCATTAGCTATGGAGGGAGTGAGGGTGAAGGAAGAAGA
GACGGTGACGTACGCAGCGACGACAGCTACTGCTGCATCAGCGTCGTCGT
CTTCGTCGTCTTCCAACTTTATGCCGCAGCCGTTGGAGGGTTTGCACGAT
GCAGGCCCGCCTCCGTTTCTGACGAAAACCTACGAAATGGTCGAGGATCT
ATCAACGGATGCGATCGTTTCCTGGAGCAGAACTCGCAATAGCTTCATTG
TGTGGGACTCTCACCAGTTCTCTACTACTTTGCTTCCGAAATATTTCAAG
CACAGTAATTTTTCTAGCTTCATTCGCCAGCTCAACACTTATGGTTTTAG
AAAGGTTGATCCTGATAGATGGGAATTTGCCAATGAAGGATTTTTGGGAG
GGCAGAAGCATCTACTGAAAACAATCAAGAGAAGGCGACACGTCTCACAG
AGTATGCAACAGCGAGGAGGAGAAGCTTGTCTTGAGGTGGGACAATATGG
ACTGGATGGTGAGCTTGAAAGATTAAAGAGGGACCGAAATGTGTTGATGG
CAGAAATTGTTAGGCTGAGGCAACATCAGCAGCAATCAAGAGATCAACTC
AGTGCAATGGAGGATAGGTTATTAAGCA
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