CV886948

Overview
NameCV886948
Unique NameCV886948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length987
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886948 vs. ExPASy Swiss-Prot
Match: BH048_ARATH (Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.073e-53
Identity = 118/184 (64.13%), Postives = 133/184 (72.28%), Query Frame = -1
Query:  436 NDSSEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAESGSLIDSSFPGVVMPVMWPELQAHGNRQQYQ--QQWHHFDGHHQPLLGGAEESHNFVTPENSLLSYDSSANSATLHTNQLKMEL 981
            N SS +++KLPYVHVRARRGQATD+HSLAERARREKINARMKLLQELVPGC+KI GTALVLDEIINHVQ+LQRQVE LSMRLAAVNPRIDFNLDS+  +E+GSL+D SF                N + Y   QQW  FDG+HQP  G  E+ H            + S  SATLH NQ+KMEL
Sbjct:  171 NKSSVESDKLPYVHVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQRQVEMLSMRLAAVNPRIDFNLDSILASENGSLMDGSF----------------NAESYHQLQQW-PFDGYHQPEWGREEDHH----------QANFSMGSATLHPNQVKMEL 327          
BLAST of CV886948 vs. ExPASy Swiss-Prot
Match: BH060_ARATH (Transcription factor bHLH60 OS=Arabidopsis thaliana GN=BHLH60 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 7.198e-50
Identity = 124/238 (52.10%), Postives = 142/238 (59.66%), Query Frame = -1
Query:  436 NDSSEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNK-----------------------------------------------ISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAESGSLIDSSFPGVVMPVMWPEL-----QAHGNRQQYQ---QQWHHFDGHHQPLLGGAE-ESHNFVTPENSLLSYDSSANSATLHTNQLKMEL 981
            N SSE+ EKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGC+K                                               I GTALVLDEIINHVQSLQRQVE LSMRLAAVNPRIDFNLD++  +E+GSL+D SF    M + WP+      Q+  +RQ  Q   QQW  FDG +QP+ G  E ++H         +S +    SA LH NQ+KMEL
Sbjct:  190 NKSSEENEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKGTDFGGKIKIKVCFGVHLLMISGKKVAIFLWKVSCEDLIDCSFSPPRIQGTALVLDEIINHVQSLQRQVEMLSMRLAAVNPRIDFNLDTILASENGSLMDGSFNAAPMQLAWPQQAIETEQSFHHRQLQQPPTQQW-PFDGLNQPVWGREEDQAHGNDNSNLMAVSENVMVASANLHPNQVKMEL 426          
BLAST of CV886948 vs. ExPASy Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.246e-34
Identity = 80/131 (61.07%), Postives = 98/131 (74.81%), Query Frame = -1
Query:  595 SEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAE-----SGSLIDSSFPGVVMPVMWPELQAHGNRQQ 972
            S D  K  Y+HVRARRGQAT+SHSLAER RREKI+ RMK LQ+LVPGCNK++G A++LDEIIN+VQSLQRQVEFLSM+LA VNP++DFNL+ L   +     +GS   + FP   M + +P L  HG  QQ
Sbjct:  292 SSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLAKDALQLRAGSSSTTPFP-PNMSMAYPPL-PHGFMQQ 420          
BLAST of CV886948 vs. ExPASy Swiss-Prot
Match: BH063_ARATH (Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.239e-34
Identity = 73/107 (68.22%), Postives = 89/107 (83.18%), Query Frame = -1
Query:  673 ANDSSE---DAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAESGS 984
            +NDSS+   + EK  Y+HVRARRGQATDSHS+AER RREKI+ RMK LQ+LVPGC+KI+G A +LDEIIN+VQSLQRQ+EFLSM+LA VNPR DF++D +F  E  S
Sbjct:  154 SNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPRPDFDMDDIFAKEVAS 260          
BLAST of CV886948 vs. ExPASy Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.537e-34
Identity = 85/159 (53.46%), Postives = 105/159 (66.04%), Query Frame = -1
Query:  472 YVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAESGSLIDSSFPGVVMPVMWPELQAHGNRQQYQQQWHHFDGHHQPLLGGAEESHNFVTPENSLLSYDSSANS 948
            Y+HVRARRGQATDSHSLAER RREKI+ RMKLLQ+LVPGCNK++G AL+LDEIIN+VQSLQRQVEFLSM+L++VN R+DFN+D+L       L    FP               N   + QQ    D   + LLG   + HN    +N  L+ D S+N+
Sbjct:  255 YIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDAL-------LSKDIFPS-------------SNNLMHHQQVLQLDSSAETLLG---DHHN----KNLQLNPDISSNN 386          
BLAST of CV886948 vs. ExPASy Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.611e-33
Identity = 82/163 (50.31%), Postives = 108/163 (66.26%), Query Frame = -1
Query:  499 ANDSSEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVN-PRIDFNLDSLFVAESGSLIDSSFPGVVMPVMWPELQAHGNRQQYQQQWHHFDGHHQPLLGGAEESHNFVTPENSL 984
            +N++        Y+HVRARRGQATDSHSLAER RREKI  RMKLLQ+LVPGCNK++G AL+LDEIIN+VQSLQRQVEFLSM+L++VN  R+DFN+D+L         D   P     +    LQ+  +   +QQQ + ++ + Q L   +  +    +P NSL
Sbjct:  286 SNNTKPPEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFNVDALVSK------DVMIPSSNNRLHEEGLQSKSSSHHHQQQLNIYNNNSQLLPNISSNNMMLQSPMNSL 442          
BLAST of CV886948 vs. ExPASy Swiss-Prot
Match: BH076_ARATH (Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.968e-32
Identity = 87/201 (43.28%), Postives = 125/201 (62.19%), Query Frame = -1
Query:  439 ANDSSEDAEKLP-------YVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAESGSLIDSSFPGVVMPVMWPELQAHGNRQQYQQQWHHFDGHHQP------LLGGA---EESHNFVTPENSLLSYDSSANSATLH---TNQLKME 984
            +N +  ++EK P       Y+H+RARRGQAT+SHSLAER RREKI+ RMK LQ+LVPGC+K++G A++LDEIIN+VQSLQ Q+EFLSM+L+AVNP +DFNL+SL   ++      +FP   M +++P +        Y  Q     G  QP      LL G    +E+H + +  ++L+  +    +A  H   T  +K+E
Sbjct:  201 SNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFNLESLLAKDALQSSAPTFPH-NMSMLYPPV-------SYLSQ----TGFMQPNISSMSLLSGGLKRQETHGYESDHHNLVHMNHETGTAPDHEDTTADMKVE 389          
BLAST of CV886948 vs. ExPASy Swiss-Prot
Match: BH074_ARATH (Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.968e-32
Identity = 67/100 (67.00%), Postives = 85/100 (85.00%), Query Frame = -1
Query:  682 NDSSEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAE 981
            +  SE+A K  Y+H+RARRGQAT+SHSLAER RREKI+ RM+LLQELVPGCNKI+G A++LDEIIN+VQSLQ+QVEFLSM+LA VNP I+ ++D +   +
Sbjct:  192 SSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEINIDIDRILAKD 291          
BLAST of CV886948 vs. ExPASy Swiss-Prot
Match: BH077_ARATH (Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.182e-32
Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = -1
Query:  682 DSSEDAEK----LPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRIDFNLDSLFVAE 978
            D+ +DA+       Y+HVRARRGQATDSHSLAERARREKI+ RM LLQ+LVPGCN+I+G A++LDEIIN+VQSLQRQVEFLSM+LA VNPR++FN ++    E
Sbjct:  174 DNKDDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMEFNANASLSTE 276          
BLAST of CV886948 vs. ExPASy Swiss-Prot
Match: BPE_ARATH (Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.850e-30
Identity = 64/79 (81.01%), Postives = 74/79 (93.67%), Query Frame = -1
Query:  712 YVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRID 948
            Y+HVRARRGQATDSHSLAERARREKI+ RMK+LQ+LVPGCNK+ G ALVLDEIIN++QSLQRQVEFLSM+L AVN R++
Sbjct:  133 YIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 211          
The following BLAST results are available for this feature:
BLAST of CV886948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
BH048_ARATH1.073e-5364.13Transcription factor bHLH48 OS=Arabidopsis thalian... [more]
BH060_ARATH7.198e-5052.10Transcription factor bHLH60 OS=Arabidopsis thalian... [more]
BH049_ARATH3.246e-3461.07Transcription factor bHLH49 OS=Arabidopsis thalian... [more]
BH063_ARATH4.239e-3468.22Transcription factor bHLH63 OS=Arabidopsis thalian... [more]
BH062_ARATH5.537e-3453.46Transcription factor bHLH62 OS=Arabidopsis thalian... [more]
BH078_ARATH1.611e-3350.31Transcription factor bHLH78 OS=Arabidopsis thalian... [more]
BH076_ARATH3.968e-3243.28Transcription factor bHLH76 OS=Arabidopsis thalian... [more]
BH074_ARATH3.968e-3267.00Transcription factor bHLH74 OS=Arabidopsis thalian... [more]
BH077_ARATH5.182e-3267.96Transcription factor bHLH77 OS=Arabidopsis thalian... [more]
BPE_ARATH4.850e-3081.01Transcription factor BPE OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026B07_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T7_B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886948 ID=CV886948; Name=CV886948; organism=Citrus sinensis; type=EST; length=987bp
AATGTCCAATAGGGCTACACAGTTACTTTACAAGACGATAAAGCCACAGA
TCATATTATAGAGAAGAAAGGAAGACTTGCATAAATAAGAACGCACGATA
GTCCACTCTATGCTTTTACAGTATGAATCAATCAATCATCTCAGAAATTA
AGAATTAGATTGAATGACTCTGAGGGGAAAATTAGTATTCTAATTAAGTA
AGAGATACTTATAATAAATATATTTATATTTATATAAGAATGACACACTG
AAAGTGATCGTCTCCGGTAGAAACAAATCTGGGTTTCCAAATGACTCGGG
GTAAATTGAAGACAAATGGTAGCCCAGGATCAATGCTGAGGACTGCCCTC
TACTACTCTGCTAACCGCTAATATTATCATCAATATATACAGTACGAGGT
ACTAGCTACTGCTGGAGAGATTCATTGCATCTTCATAGCTCCATCTTCAA
TTGATTTGTGTGCAGAGTTGCTGAATTTGCTGAAGAATCATAACTCAAAA
GTGAGTTCTCGGGAGTAACAAAGTTATGGCTTTCTTCTGCTCCTCCCAAA
AGAGGCTGGTGATGCCCATCAAAATGATGCCATTGCTGTTGATACTGTTG
TCGGTTTCCATGGGCTTGGAGTTCAGGCCACATTACAGGCATAACCACGC
CAGGGAAGCTACTGTCGATTAACGATCCACTCTCTGCAACAAATAAGCTG
TCCAGATTGAAATCAATCCTTGGATTGACTGCTGCAAGTCTCATTGACAA
GAACTCCACTTGACGCTGTAACGACTGCACATGGTTGATGATCTCATCTA
AAACTAATGCTGTCCCAGAAATCTTATTGCAGCCCGGGACCAGCTCTTGT
AACAGCTTCATTCGTGCATTAATCTTCTCTCTCCTCGCTCTCTCGGCCAA
GCTGTGGCTATCTGTAGCTTGACCGCGACGAGCTCGGACGTGAACGTAAG
GAAGTTTCTCCGCATCTTCGCTGCTATCGTTAGCGCC
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