CV886946

Overview
NameCV886946
Unique NameCV886946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHS2_CITSI (Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=2 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 9.830e-103
Identity = 193/213 (90.61%), Postives = 193/213 (90.61%), Query Frame = -1
Query:  210 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 848
            ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALF           DPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVES         KATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA
Sbjct:  179 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAVIVGADPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESKLGLKGEKLKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 391          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHS1_RUTGR (Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=2 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 8.911e-96
Identity = 177/213 (83.10%), Postives = 184/213 (86.38%), Query Frame = -1
Query:  210 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 848
            ENN+GARVLVVCSEITAVTFRGPADTHLDSLVGQALF           DPD S+ERPLYQLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQVE+         +ATRQVLSEYGNMSSACVLFILDEMRK   EE +ATTGEGLDWGVLFGFGPGLTVETVVL SVPIKA
Sbjct:  181 ENNRGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAVIVGADPDESIERPLYQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKNCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPIKA 393          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 3.386e-95
Identity = 176/213 (82.63%), Postives = 184/213 (86.38%), Query Frame = -1
Query:  210 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 848
            ENN+GARVLVVCSEITAVTFRGPADTHLDSLVGQALF           DP+ S+ERPLYQLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQVE+         +ATRQVLSEYGNMSSACVLFILDEMRKK  EE +ATTGEGLDWGVLFGFGPGLTVETVVL SVPI A
Sbjct:  181 ENNRGARVLVVCSEITAVTFRGPADTHLDSLVGQALFGDGAAAVIVGADPNESIERPLYQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEAKLGLKEEKLRATRQVLSEYGNMSSACVLFILDEMRKKCAEEGRATTGEGLDWGVLFGFGPGLTVETVVLRSVPINA 393          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHSY_PETCR (Chalcone synthase OS=Petroselinum crispum GN=CHS PE=3 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.681e-94
Identity = 173/210 (82.38%), Postives = 183/210 (87.14%), Query Frame = -1
Query:  219 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 848
            ENN GARVLVVCSEITAVTFRGP+D+HLDSLVGQALF           DPD SVERPL+QL+S +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILDQVE          +ATRQVLS+YGNMSSACVLFILDEMRKKS+EE KATTGEGLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  184 ENNAGARVLVVCSEITAVTFRGPSDSHLDSLVGQALFGDGAAAVILGSDPDLSVERPLFQLISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 393          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHSY_BETVE (Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 SV=2)

HSP 1 Score: 345.51 bits (885), Expect = 2.195e-94
Identity = 172/211 (81.52%), Postives = 184/211 (87.20%), Query Frame = -1
Query:  216 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 848
            ENNKGARVLVVCSEITAVTFRGP DTHLDSLVGQALF           DPDTSVERPL++L+S +QTILPDSDGAIDGHLREVGLTFHLLKDVPG+ISKNIEKSL+EAFAPLGISDWNS+FWIAHPGGPAILDQVES         +ATR VLSEYGNMSSACVLFILDEMR+ S+E  K TTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  179 ENNKGARVLVVCSEITAVTFRGPTDTHLDSLVGQALFGDGAAAVIVGADPDTSVERPLFELISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLAEAFAPLGISDWNSLFWIAHPGGPAILDQVESKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRRNSLEGGKVTTGEGLEWGVLFGFGPGLTVETVVLHSVPV 389          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHS3_RUTGR (Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=2 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 2.195e-94
Identity = 175/213 (82.16%), Postives = 181/213 (84.98%), Query Frame = -1
Query:  210 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 848
            ENN+GARVLVVCSEITAVTFRGP DTHLDSLVGQALF           DPD S+ERPLYQLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNSIFWIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRKK  EE  ATTGEGL+WGVLFGFGPGLTVETVVL SVPIKA
Sbjct:  181 ENNRGARVLVVCSEITAVTFRGPVDTHLDSLVGQALFGDGAAAVIVGADPDESIERPLYQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSIFWIAHPGGPAILDQVEEKLELKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKCAEEGMATTGEGLEWGVLFGFGPGLTVETVVLRSVPIKA 393          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHS2_DAUCA (Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 3.744e-94
Identity = 172/210 (81.90%), Postives = 183/210 (87.14%), Query Frame = -1
Query:  219 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 848
            ENN GARVLVVCSEITAVTFRGP+D+HLDSLVGQALF           DPD SVERPL+QL+S +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF P+GISDWNS+FWIAHPGGPAILDQVE          +ATRQVLS+YGNMSSACVLFILDEMRKKS+EE KATTG+GLDWGVLFGFGPGLTVETVVLHSVP
Sbjct:  183 ENNTGARVLVVCSEITAVTFRGPSDSHLDSLVGQALFGDGAAAVIVGSDPDLSVERPLFQLISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPIGISDWNSLFWIAHPGGPAILDQVELKLGLKEEKMRATRQVLSDYGNMSSACVLFILDEMRKKSIEEGKATTGDGLDWGVLFGFGPGLTVETVVLHSVP 392          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSJ (Chalcone synthase OS=Oryza sativa subsp. japonica GN=CHS PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.271e-91
Identity = 165/213 (77.46%), Postives = 183/213 (85.92%), Query Frame = -1
Query:  210 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 848
            ENN+GARVL VCSEITAVTFRGP+++HLDS+VGQALF           DPD +VERPL+Q+VS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L +AF PLGISDWNSIFW+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  182 ENNRGARVLAVCSEITAVTFRGPSESHLDSMVGQALFGDGAAAVIVGSDPDEAVERPLFQMVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALGDAFTPLGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSI (Chalcone synthase OS=Oryza sativa subsp. indica GN=CHS PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.271e-91
Identity = 165/213 (77.46%), Postives = 183/213 (85.92%), Query Frame = -1
Query:  210 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIKA 848
            ENN+GARVL VCSEITAVTFRGP+++HLDS+VGQALF           DPD +VERPL+Q+VS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L +AF PLGISDWNSIFW+AHPGGPAILDQVE+         +ATR VLSEYGNMSSACVLFILDEMRK+S E+  ATTGEG+DWGVLFGFGPGLTVETVVLHSVPI A
Sbjct:  182 ENNRGARVLAVCSEITAVTFRGPSESHLDSMVGQALFGDGAAAVIVGSDPDEAVERPLFQMVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALGDAFTPLGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CV886946 vs. ExPASy Swiss-Prot
Match: CHSY_ARAAL (Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.271e-91
Identity = 169/212 (79.72%), Postives = 183/212 (86.32%), Query Frame = -1
Query:  216 ENNKGARVLVVCSEITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXDPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQVESXXXXXXXXXKATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 848
            ENN+GARVLVVCSEITAVTFRGP+DTHLDSLVGQALF           DPDTSV E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNS+FWIAHPGGPAILDQVE          +ATR VLSEYGNMSSACVLFILDEMRKKS ++  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  180 ENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFSDGAAALIVGSDPDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKAEKMRATRHVLSEYGNMSSACVLFILDEMRKKSAKDGAATTGEGLEWGVLFGFGPGLTVETVVLHSVPL 391          
The following BLAST results are available for this feature:
BLAST of CV886946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS2_CITSI9.830e-10390.61Chalcone synthase 2 OS=Citrus sinensis GN=CHS2 PE=... [more]
CHS1_RUTGR8.911e-9683.10Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=... [more]
CHS2_RUTGR3.386e-9582.63Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]
CHSY_PETCR1.681e-9482.38Chalcone synthase OS=Petroselinum crispum GN=CHS P... [more]
CHSY_BETVE2.195e-9481.52Chalcone synthase OS=Betula verrucosa GN=CHS PE=2 ... [more]
CHS3_RUTGR2.195e-9482.16Chalcone synthase 3 OS=Ruta graveolens GN=CHS3 PE=... [more]
CHS2_DAUCA3.744e-9481.90Chalcone synthase 2 OS=Daucus carota GN=CHS2 PE=2 ... [more]
CHSY_ORYSJ2.271e-9177.46Chalcone synthase OS=Oryza sativa subsp. japonica ... [more]
CHSY_ORYSI2.271e-9177.46Chalcone synthase OS=Oryza sativa subsp. indica GN... [more]
CHSY_ARAAL2.271e-9179.72Chalcone synthase OS=Arabis alpina GN=CHS PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026B06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T7_B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886946 ID=CV886946; Name=CV886946; organism=Citrus sinensis; type=EST; length=848bp
TTTTTTTTTTTTTTTCTCAAATTCCCAAGAATTTATGCATAAACACAAAG
CGTTGCCCAGGTTTGGTGACGTCATAAGAGAAAAGGCACGATGCCTTAAA
CTCAATTGACAAAACTAAACCTTCACACGATCAACCAATAACTCAACTGT
GAAAGCATACAACATAAAGTTACTGAACTACTAAACATACTGATGGAGTT
CTCACTTCAAGCTTTGATGGGGACACTGTGCAGCACAACGGTCTCGACGG
TGAGCCCCGGCCCGAACCCGAACAGCACACCCCAATCAAGCCCTTCGCCG
GTGGTGGCTTTCGCTTCCTCAACAGACTTCTTTCTCATCTCGTCAAGGAT
GAACAAGACACAAGCGCTTGACATGTTACCGTACTCACTCAACACTTGAC
GTGTGGCCTTCAGCTTCTCCCCTTTGAGGCCCAGTTTAGACTCCACTTGG
TCCAGAATTGCGGGCCCACCGGGGTGAGCGATCCAGAATATCGAGTTCCA
GTCGCTGATGCCAAGCGGGGCGAACGCTTCAGACAGGCTTTTCTCTATAT
TCTTTGAGATCAAGCCGGGGACGTCTTTAAGCAAATGGAAAGTGAGACCG
ACTTCGCGCAAGTGTCCGTCAATTGCACCGTCAGAGTCAGGGAGGATCGT
CTGCGAAGTCGACACGAGCTGATACAACGGACGCTCGACCGACGTGTCAG
GATCGGCACCCACGATCACAGCAGCAGCACCATCACCGAACAAAGCCTGG
CCCACAAGAGAATCAAGATGAGTATCGGCAGGGCCGCGGAAAGTGACTGC
CGTGATCTCCGAACAGACAACAAGAACGCGAGCGCCCTTGTTGTTCTC
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