CV886922

Overview
NameCV886922
Unique NameCV886922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length949
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886922 vs. ExPASy Swiss-Prot
Match: MTPC3_ARATH (Putative metal tolerance protein C3 OS=Arabidopsis thaliana GN=MTPC3 PE=3 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 7.907e-83
Identity = 152/262 (58.02%), Postives = 195/262 (74.43%), Query Frame = -1
Query:  167 SLAVIASTXXXXXXXXSGFILWFTANAMKNPNQYYYPIGKKRMQPVGIIVFASVMATLGLQILFESIRAIITKSRPD-MDTQQEKWMIGIMVSVTLVKFLLMVYCRRFNNEIVRAYAQDHFFDVITNSVGLVTAVLAVRFYWWIDPTGAIIIALYTISTWARTVIENVLSLIGRTAPPDFLAKVTYLIWNH-HEEIKHIDTVRAYTFGAHYFVEVDIVLPEDMVLHQAHNIGETLQEKLEQLPQVERAFVHIDFEFTHRPEH 946
            S+A+ AST        +G ILWFT  +MKN N Y YPIGK R+QPVGII+FA+VMATLG Q+L  +   +I+    + M+  Q  W+  IM+S T +K +L +YC+   N IVRAYA+DH FDV+TN +GLV AVLA  FYWW+DPTGAI++A+YTI  W+ TV+EN +SLIG++APP+ L K+TYL+     + IKH+DTVRAYTFG  YFVEVDI LPED+ L +AH IGE+LQ KLE+LP+VERAFVH+DFE  H+PEH
Sbjct:  140 SIAIAASTLDSLLDLMAGGILWFTHLSMKNVNIYKYPIGKLRVQPVGIIIFAAVMATLGFQVLLVAAEQLISNEPSEKMNHVQLIWLYSIMLSATAIKLVLWIYCKSSRNHIVRAYAKDHHFDVVTNVLGLVAAVLANAFYWWLDPTGAILLAIYTIVNWSGTVMENAVSLIGQSAPPEVLQKLTYLVMRQGGDNIKHVDTVRAYTFGVLYFVEVDIELPEDLPLKEAHAIGESLQIKLEELPEVERAFVHLDFECHHKPEH 401          
BLAST of CV886922 vs. ExPASy Swiss-Prot
Match: P34_RICPR (Protein p34 OS=Rickettsia prowazekii GN=p34 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.624e-11
Identity = 51/253 (20.16%), Postives = 120/253 (47.43%), Query Frame = -1
Query:  194 SLAVIASTXXXXXXXXSGFILWFTANAMKNPNQYYYPIGKKRMQPVGIIVFASVMATLGLQILFESIRAIITKSRPDMDTQQEKWMIGIMVSVTLVKFLLMVYC-RRFNNEIVRAYAQDHFFDVITNSVGLVTAVLAVRFYWWIDPTGAIIIALYTISTWARTVIENVLSLIGRTAPPDFLAKVTYLIWNHHEEIKHIDTVRAYTFGAHYFVEVDIVLPEDMVLHQAHNIGETLQ-EKLEQLPQVERAFVHID 946
            S +++AS         S FI          P  +Y+  G ++MQ + I   +         + F S++++  K++P+ +      ++ + + +T++  L   Y  ++  +EIV+A    +F D++TN + +++  L+  ++W++DP   ++I+LY   +      +   +L+    P     K+  ++ N+H  +K +  ++        F++  + +  ++ L+ AH I + +  E L++ P+ E   +H D
Sbjct:   36 SQSILASLIDSMLDITSSFINLVALRFALQPPDHYHRFGHEKMQDLTIFSQSIFFFASAFFVGFASVKSLFIKTKPE-NISDGTIIMYLCMFLTIILVLYQTYVIKKTGSEIVKADKLHYFTDLLTNVIVIISINLS-DYFWFVDPLFGVVISLYIFHSSYSLFKKAFKNLVDHELPEQDRQKIISIV-NNHSGVKGMHEMKTRYAAQKAFIQCHLEMDGNISLYSAHKISDEIAFEILQKFPEAE-IIIHQD 284          
The following BLAST results are available for this feature:
BLAST of CV886922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MTPC3_ARATH7.907e-8358.02Putative metal tolerance protein C3 OS=Arabidopsis... [more]
P34_RICPR3.624e-1120.16Protein p34 OS=Rickettsia prowazekii GN=p34 PE=3 S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026A05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T7_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886922 ID=CV886922; Name=CV886922; organism=Citrus sinensis; type=EST; length=949bp
TCAATGGAGGAGTTTCCGCAGACATTAGTTTGTTATTTTTGAGTTATTTA
CATGATTTAGTGAGCATTCTTCATTCCAAAAGAAAGTTTCCAGAATAACA
TAAAACTAATTTGCCGATGAAACATAACATTTCTATTCCCAGCAAAGTAA
TCTATGCTCTAGACTTATGTTCAGGCCGATGAGTAAACTCAAAATCAATG
TGCACAAAAGCCCTTTCGACCTGAGGCAGCTGCTCGAGCTTCTCCTGTAA
AGTCTCTCCAATGTTATGTGCCTGATGCAGCACCATGTCTTCGGGCAAAA
CGATGTCGACTTCCACAAAATAATGAGCCCCAAACGTGTATGCCCTCACT
GTGTCAATGTGCTTAATTTCCTCGTGATGATTCCATATTAGATATGTCAC
TTTGGCCAGAAAATCTGGTGGGGCTGTTCTTCCGATGAGTGATAACACGT
TCTCGATCACAGTCCTTGCCCATGTACTAATCGTGTACAATGCTATTATT
ATAGCACCGGTGGGATCAATCCACCAGTAGAATCTGACGGCTAGAACAGC
AGTGACTAGGCCAACTGAATTGGTAATCACATCAAAGAAATGGTCTTGAG
CGTAAGCACGAACAATCTCATTGTTGAATCTTCTGCAGTAGACCATTAGC
AGGAATTTTACTAATGTGACGGAAACCATGATCCCAATCATCCATTTTTC
CTGCTGGGTGTCCATGTCTGGCCGCGACTTTGTAATGATTGCTCGGATAG
ACTCAAACAAGATCTGCAATCCGAGAGTTGCCATAACCGATGCAAACACA
ATGATCCCCACTGGCTGCATTCTTTTTTTCCCAATTGGGTAGTAATATTG
ATTCGGATTCTTCATGGCATTGGCAGTGAACCAGAGGATGAAACCCGATA
AGAGATCAAGGAGAGAATCCAGAGTCGAGGCAATGACAGCTAATGATCT
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