CV886913

Overview
NameCV886913
Unique NameCV886913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886913 vs. ExPASy Swiss-Prot
Match: POP5_ARATH (Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1687 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.051e-50
Identity = 100/155 (64.52%), Postives = 127/155 (81.94%), Query Frame = 2
Query:   23 MVGFKNRYMVVEVFLDPNKELPVDD-PVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEEVKFEHYKLAVGARLSADVTQHMENCLEKIKILEH 484
            MVGFKNRYM++EVFLDP+K+L  +  P+ILTQFN+SKAI+DSILVNFGECGL SSLGSFQVKYVNPITKLCI+R+SRE+ ++VW A+T+V+SIGNC V+ N+LD+SG IRAC++ ALKC++ KFE         LS +  + M   LEKIK+LE+
Sbjct:    1 MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQVKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCDKEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151          
BLAST of CV886913 vs. ExPASy Swiss-Prot
Match: POP5_SCHPO (Ribonucleases P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe GN=SPCC830.09c PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.781e-12
Identity = 43/133 (32.33%), Postives = 72/133 (54.14%), Query Frame = 2
Query:   23 MVGFKNRYMVVEVFLDPNKELPVDDPVI-----LTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCEEVKFEHYKL 406
            MV FK+RY++ EV     KE   D P I     +T  ++SK IR  +  NFG+ G+     S  VKY +P T   I+R SR+  +  W+A+ ++R +    V+  V+ +SG+I+  + AA++  + +  +  L
Sbjct:    1 MVRFKSRYLLFEVLYPEAKEF-FDYPTIPSDSSITTSSLSKIIRTMVAENFGDVGIGKVASSLTVKYFSPNTSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRVVRVSGTIKKAELAAIERNKSEIHNISL 132          
The following BLAST results are available for this feature:
BLAST of CV886913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
POP5_ARATH2.051e-5064.52Probable ribonuclease P/MRP protein subunit POP5 O... [more]
POP5_SCHPO3.781e-1232.33Ribonucleases P/MRP protein subunit POP5 OS=Schizo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_026A01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_026_T3_A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886913 ID=CV886913; Name=CV886913; organism=Citrus sinensis; type=EST; length=874bp
GTGATCTTTGAGATAAAGGATCATGGTAGGATTTAAAAATAGGTATATGG
TAGTGGAGGTATTTTTGGACCCAAATAAAGAGCTTCCCGTGGATGATCCT
GTTATACTTACCCAATTTAATGTGTCAAAAGCAATTCGAGACAGCATTCT
TGTAAACTTCGGCGAGTGTGGTCTAGCTTCTTCGCTTGGATCATTCCAAG
TCAAGTATGTGAATCCCATCACCAAGCTATGTATCATCAGAGCCTCAAGG
GAGGATTGTCAGAAGGTTTGGTCTGCAATGACCATGGTTAGAAGCATAGG
AAATTGCCTGGTTCTATTTAACGTACTGGACCTAAGTGGGAGCATCAGGG
CCTGTAAGAATGCTGCATTGAAGTGTGAGGAGGTGAAATTTGAACATTAT
AAGCTTGCCGTTGGAGCACGTCTCTCAGCCGATGTTACTCAACACATGGA
AAACTGTCTGGAGAAGATCAAAATTTTGGAACACTGAAAATATCTTATCC
TTGTAAGTGGTTAAGTAGTAGATTTTCATATTCTCTTTTAACTACAATAG
CTTGCTCCATTAATCACAGACTTTCTTTTTACCATTTTTAGCTTTTTTTT
CCCACCGTTTTTTTTTAACTTTCTTTCTATTTTCGTAGAAATATCATAAT
CTCACCTTTAATTGCTGATTGTAGTGATTTTGGCTTGATGAGGATGCAAC
TCTTTGTAAGCAACCATCAAAGCTCAAGAAACTTTGTTTAATTGGTTCAA
ATAGATGATTTAGAGTATTTAAAAAGATCCAAGGGTCATTAAAGCATCAC
CGGACAAGTGTTTGAAATGCAAAAGAAAAAAACGCAGTTCTAAAATTCAC
AAAATTAATATTGCAACCGAAAAA
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