CV886901

Overview
NameCV886901
Unique NameCV886901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886901 vs. ExPASy Swiss-Prot
Match: IF5Z_ARATH (Probable eukaryotic translation initiation factor 5-2 OS=Arabidopsis thaliana GN=At1g77840 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.642e-50
Identity = 112/213 (52.58%), Postives = 141/213 (66.20%), Query Frame = 1
Query:  139 QWQTDTSLEAAKQRIQEQLSSVTADMVMLXXXXXXXXXXXXXPDRESKGHENGASGP---NTHLADQMKDFLKKGASASQFKSFLGSLSGTAQ-VMDALFVALFDGIEKGFAKEVTKKKNYLAAAT--QEEGSQMVLLHSLESFCGK-ARPXXXXXXXXXXXXXYDNDLLEEEFILDWYQKGLGGANKNSQVWKNAKPVIEWLQNAESETEED 756
            +WQTDTS EAA++R+ EQLS+ TA+MVML             P  +S G+      P     +L   MK++LKKG+  S  KSF+ SLS   Q +MDALF ALFDG+ KGFAKEVTKKKNYLAAA   QE+GSQM LL+S+ +FCGK                 YD D++EEE +LDWY+KGL GA+K+S VWKN KP +EWLQ+AESE+EE+
Sbjct:  227 EWQTDTSREAAEKRMMEQLSAKTAEMVMLSAMEVEEKKA---PKSKSNGNVVKTENPPPQEKNLVQDMKEYLKKGSPISALKSFISSLSEPPQDIMDALFNALFDGVGKGFAKEVTKKKNYLAAAATMQEDGSQMHLLNSIGTFCGKNGNEEALKEVALVLKALYDQDIIEEEVVLDWYEKGLTGADKSSPVWKNVKPFVEWLQSAESESEEE 436          
BLAST of CV886901 vs. ExPASy Swiss-Prot
Match: IF5_PHAVU (Eukaryotic translation initiation factor 5 OS=Phaseolus vulgaris GN=EIF5 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.219e-47
Identity = 105/207 (50.72%), Postives = 133/207 (64.25%), Query Frame = 1
Query:  139 QWQTDTSLEAAKQRIQEQLSSVTADMVMLXXXXXXXXXXXXXPDRESKGHENGASGPNTHLADQMKDFLKKGASASQFKSFLGSLSGTAQV-MDALFVALFDGIEKGFAKEVTKKKNYLAAATQEEGSQMVLLHSLESFCGKARPXXXXXXXXXXXXXYDNDLLEEEFILDWYQKGLGGANKNSQVWKNAKPVIEWLQNAESETEED 756
            QW TDTSL+A++QRI+EQLS+VTADMVML                ++ G +NG S     +  ++K  LKKG  AS+  S L +L   AQ  M AL  ALF+G EKGF +E  KKKNY AAA  EEGSQ++LLH++E FC K                YD D+LEEE I+ WYQKGL G NKNS++WKNA+P I+WLQNAESE++E+
Sbjct:  239 QWLTDTSLDASRQRIKEQLSAVTADMVMLTTDEPEKKKKAA--SNQNGGSQNGNSKNYGTVVAEVKANLKKGFGASELLSHLAALPVPAQEKMSALVEALFEGTEKGFGRETLKKKNYFAAAVAEEGSQILLLHAIEEFCCKPNSNALKEVALVLKTLYDADVLEEEAIVLWYQKGLKGDNKNSKIWKNAQPFIDWLQNAESESDEE 443          
BLAST of CV886901 vs. ExPASy Swiss-Prot
Match: IF5Y_ARATH (Probable eukaryotic translation initiation factor 5-1 OS=Arabidopsis thaliana GN=At1g36730 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.453e-39
Identity = 104/216 (48.15%), Postives = 130/216 (60.19%), Query Frame = 1
Query:  139 QWQTDTSLEAAKQRIQEQLSSVTADMVMLXXXXXXXXXXXXXPDRESKGHENGAS--GPNTH--LADQMKDFLKKGASASQFKSFLGSLSGTAQ-VMDALFVALFDGIEKGFAKEVTKKKNYLAA--ATQEEG---SQMVLLHSLESFCGKARPXXXXXXXXXXXXXYDNDLLEEEFILDWYQKGLGGANKNSQVWKNAKPVIEWLQNAESETEED 756
            QWQTDTS EAA++R++EQLS+VTA+MVML                E + HENG S    N H  L +++K+ L  G+S +Q K+ L S S   Q  MDALF ALF G  KGFAKEV KKK YL A    QEE    +QM LL+ +ESFC KA               YD D+L+E+ I++WY KG+    K+S V KN  P IEWLQNAESE+EE+
Sbjct:  229 QWQTDTSREAAEKRMKEQLSAVTAEMVMLSTVEEKKPVAEVKKAPE-QVHENGNSKIPENAHEKLVNEIKELLSSGSSPTQLKTALASNSANPQEKMDALFSALFGGTGKGFAKEVIKKKKYLLALMMMQEEAGAPAQMGLLNGIESFCMKASAEAAKEVALVIKGLYDEDILDEDVIVEWYNKGV----KSSPVLKNVTPFIEWLQNAESESEEE 439          
BLAST of CV886901 vs. ExPASy Swiss-Prot
Match: IF5_MAIZE (Eukaryotic translation initiation factor 5 OS=Zea mays GN=EIF5 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.349e-36
Identity = 94/220 (42.73%), Postives = 121/220 (55.00%), Query Frame = 1
Query:  139 QWQTDTSLEAAKQRIQEQLSSVTADMVMLXXXXXXXXXXXXXPDRESKGHENGAS-------------GPNTHLADQMKDFLKKGASASQFKSFLGSLSGTAQ-VMDALFVALFDGIEKGFAKEVTKKKNYLAAATQEEGSQMVLLHSLESFCGKARPXXXXXXXXXXXXXYDNDLLEEEFILDWYQKGLGGANKNSQVWKNAKPVIEWLQNAESETEED 756
            QWQTDTS+EAAKQR+QEQLS+ TA+MVML                   G  NG++              P   L   +K  L    + SQ K+ L S +   Q VM+A   ALF G+ KGF KEV K K YLA A  +EG+Q +L+ ++E+F GK  P             YD D+L+EE I+DWY   +  A K+SQV KNAKP +EWLQ+AES+ E D
Sbjct:  234 QWQTDTSIEAAKQRMQEQLSAATAEMVMLSTEETEKKMKQPT---HKDGSTNGSAKEIPNDKPAVTKPSPYEELIGDIKASLGSAPTPSQLKAVLASSTLPPQDVMNAPLEALFGGVGKGFTKEVVKNKKYLAVAVPDEGAQTLLVQAIEAFGGKCNPEALKEVPVVLKALYDGDILDEETIVDWYNDAV-AAGKDSQVVKNAKPFVEWLQSAESDEEGD 449          
The following BLAST results are available for this feature:
BLAST of CV886901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IF5Z_ARATH1.642e-5052.58Probable eukaryotic translation initiation factor ... [more]
IF5_PHAVU2.219e-4750.72Eukaryotic translation initiation factor 5 OS=Phas... [more]
IF5Y_ARATH8.453e-3948.15Probable eukaryotic translation initiation factor ... [more]
IF5_MAIZE1.349e-3642.73Eukaryotic translation initiation factor 5 OS=Zea ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_025H07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T3_H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886901 ID=CV886901; Name=CV886901; organism=Citrus sinensis; type=EST; length=897bp
AATTCAAAGGATGTTACTGCTAAAGGGGCATCAACCAAGAAAAAGGCCCA
TTCTTCTGATGATGATCACTCTCCATCTCGCAGCCAAGCAGATGAGAACG
AACCGGCGATTGATGATGCTGACGATGATGATGACATCCAGTGGCAGACA
GATACTTCACTGGAGGCAGCCAAGCAGCGGATCCAAGAGCAGTTGAGTTC
TGTCACTGCCGATATGGTAATGCTTTCTACAACTGAAGAGAAGAAAAAGT
CAGGGAAGAAGTCTCCAGACCGGGAGAGTAAGGGACATGAGAATGGAGCT
AGTGGCCCTAACACCCATCTTGCTGATCAAATGAAGGATTTCCTGAAGAA
GGGTGCCTCTGCCAGCCAATTTAAATCCTTTCTGGGATCACTCTCTGGGA
CTGCTCAAGTTATGGATGCTTTGTTTGTAGCTCTCTTTGATGGCATTGAG
AAGGGTTTCGCTAAAGAGGTGACCAAAAAGAAGAACTACCTGGCTGCAGC
AACTCAAGAGGAGGGATCACAGATGGTTCTGCTGCACTCTCTTGAGTCTT
TCTGTGGAAAAGCAAGGCCTGCTGCAGTGAAAGAGGTGGCACTGGTTCTG
AAAGCACTGTATGACAATGACTTGTTGGAAGAAGAGTTCATTTTGGATTG
GTACCAGAAGGGCCTGGGTGGTGCCAATAAAAACTCACAAGTTTGGAAGA
ATGCCAAGCCAGTTATCGAGTGGCTCCAGAATGCCGAGTCTGAAACCGAA
GAAGATTGATCGGTGAAATACACACTGGTTCATAAGTATTTGCTATTTAC
TATACTAATAGTGGTCCTATAATAAAACCTTAGCCTTTGTGGTCTGTTGT
TACTGGTTTAATGGAGATGTCATGTCAGTAGTTATTAGTGGTAAAAT
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