CV886878

Overview
NameCV886878
Unique NameCV886878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.245e-21
Identity = 47/76 (61.84%), Postives = 61/76 (80.26%), Query Frame = -3
Query:   49 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 276
            GD  YPGG LF+PL   KD  + +ELK+KEIKNGRLAM+A LG++IQA  TG GP QNLLDH++DP++NN+L+ +K
Sbjct:  196 GDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLK 271          
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.731e-21
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = -3
Query:   67 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 276
            G+  YPGG  FDPL L+ DPV F ELKVKEIKNGRLAM +  GF++QA  TGKGP++NL DH+ DP+ NN
Sbjct:  187 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 256          
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.377e-20
Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = -3
Query:   67 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 273
            D+ YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM +  GF++QA  TGKGP++NL DH++DP++NN
Sbjct:  188 DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255          
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.377e-20
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = -3
Query:   67 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 273
            D+ YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM +  GF++QA  TGKGP++NL DH++DP++NN
Sbjct:  187 DLLYPGGS-FDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.377e-20
Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = -3
Query:   67 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 273
            D+ YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM +  GF++QA  TGKGP++NL DH++DP++NN
Sbjct:  188 DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255          
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.798e-20
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = -3
Query:   67 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 264
            YPGG+ FDPL L++DP AF ELKVKEIKNGRLAM +  GF++QA  TGKGP++NL DHI+DP++NN
Sbjct:  191 YPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255          
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.798e-20
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = -3
Query:   67 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 264
            YPGG+ FDPL L++DP AF ELKVKEIKNGRLAM +  GF++QA  TGKGP++NL DHI+DP++NN
Sbjct:  191 YPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255          
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.798e-20
Identity = 44/66 (66.67%), Postives = 56/66 (84.85%), Query Frame = -3
Query:   67 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 264
            YPGG+ FDPL L++DP AF ELKVKEIKNGRLAM +  GF++QA  TGKGP++NL DH++DP++NN
Sbjct:  198 YPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262          
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.798e-20
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = -3
Query:   67 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 264
            YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM +  GF++QA  TGKGP++NL DH++DP+ NN
Sbjct:  189 YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 253          
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.798e-20
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = -3
Query:   67 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 276
            G+  YPGG  FDPL L+ DP  F ELKVKEIKNGRLAM +  GF++QA  TGKGP++NLLDH+ +P+ NN
Sbjct:  184 GNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253          
The following BLAST results are available for this feature:
BLAST of CV886878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB13_SOLLC1.245e-2161.84Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_HORVU4.731e-2164.29Chlorophyll a-b binding protein of LHCII type III,... [more]
CB22_ARATH1.377e-2063.77Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SINAL1.377e-2065.22Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_ARATH1.377e-2063.77Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB2F_SOLLC1.798e-2068.18Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.798e-2068.18Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2B_PINSY1.798e-2066.67Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB23_TOBAC1.798e-2068.18Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_SOLLC1.798e-2062.86Chlorophyll a-b binding protein 13, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_025G07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T3_G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886878 ID=CV886878; Name=CV886878; organism=Citrus sinensis; type=EST; length=296bp
GCCAAATTTATTTATACAAGAGTATGCAAGTTGAATGATCTACATGGATT
TAACCATGGAAAGTAAATTGTTGTGAAGTGGGTCTGAGATGTGATCAAGA
AGGTTTTGTACAGGACCTTTGCCCGTGAAAGCTGCTTGGATGTAAAAGCC
TAACCAGGCAACCATTGCTAAGCGACCATTTTTAATTTCCTTCACTTTTA
GTTCCTCAAAGGCTACTGGGTCTTTTGAGAGGTTTAAGGGATCGAAGAGT
GCTCCTCCTGGATAATTGATGTCGCCGGGCAAGAAAATTCCCAGAG
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