CV886878
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.245e-21 Identity = 47/76 (61.84%), Postives = 61/76 (80.26%), Query Frame = -3 Query: 49 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNNLLSMVK 276 GD YPGG LF+PL KD + +ELK+KEIKNGRLAM+A LG++IQA TG GP QNLLDH++DP++NN+L+ +K Sbjct: 196 GDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLK 271
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 4.731e-21 Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = -3 Query: 67 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 276 G+ YPGG FDPL L+ DPV F ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH+ DP+ NN Sbjct: 187 GNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 256
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.377e-20 Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = -3 Query: 67 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 273 D+ YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN Sbjct: 188 DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.377e-20 Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = -3 Query: 67 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 273 D+ YPGG+ FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN Sbjct: 187 DLLYPGGS-FDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.377e-20 Identity = 44/69 (63.77%), Postives = 57/69 (82.61%), Query Frame = -3 Query: 67 DINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 273 D+ YPGG+ FDPL L+ DP AF ELKVKE+KNGRLAM + GF++QA TGKGP++NL DH++DP++NN Sbjct: 188 DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.798e-20 Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = -3 Query: 67 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 264 YPGG+ FDPL L++DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHI+DP++NN Sbjct: 191 YPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.798e-20 Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = -3 Query: 67 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 264 YPGG+ FDPL L++DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DHI+DP++NN Sbjct: 191 YPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.798e-20 Identity = 44/66 (66.67%), Postives = 56/66 (84.85%), Query Frame = -3 Query: 67 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 264 YPGG+ FDPL L++DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP++NN Sbjct: 198 YPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.798e-20 Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = -3 Query: 67 YPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 264 YPGGA FDPL L+ DP AF ELKVKEIKNGRLAM + GF++QA TGKGP++NL DH++DP+ NN Sbjct: 189 YPGGA-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 253
BLAST of CV886878 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.798e-20 Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = -3 Query: 67 GDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAFTGKGPVQNLLDHISDPLHNN 276 G+ YPGG FDPL L+ DP F ELKVKEIKNGRLAM + GF++QA TGKGP++NLLDH+ +P+ NN Sbjct: 184 GNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253 The following BLAST results are available for this feature:
BLAST of CV886878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CV886878 ID=CV886878; Name=CV886878; organism=Citrus sinensis; type=EST; length=296bpback to top |