EL492466

Overview
NameEL492466
Unique NameEL492466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length236
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4690 contig Csv1_Contig4690:169..404. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EL492466 vs. ExPASy Swiss-Prot
Match: RL34_PEA (60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.855e-18
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:   13 IQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 147
            IQGIPHLRP EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF
Sbjct:   51 IQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95
[Close]
BLAST of EL492466 vs. ExPASy Swiss-Prot
Match: RL341_ARATH (60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.085e-17
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:   13 IQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 147
            IQGIPHLRP+EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAF
Sbjct:   51 IQGIPHLRPSEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95
[Close]
BLAST of EL492466 vs. ExPASy Swiss-Prot
Match: RL34_TOBAC (60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.417e-17
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:   13 IQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 147
            IQGIPHLRP EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAF
Sbjct:   51 IQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95
[Close]
BLAST of EL492466 vs. ExPASy Swiss-Prot
Match: RL342_ARATH (60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.417e-17
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:   13 IQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 147
            IQGIPHLRP EYKRSRLSRNRRTVNRAYGGVLSG AVRERIIRAF
Sbjct:   51 IQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95
[Close]
BLAST of EL492466 vs. ExPASy Swiss-Prot
Match: RL343_ARATH (60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.199e-16
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:   13 IQGIPHLRPAEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 147
            IQGIPHLRPAEYKRSRL+RN RTVNRAYGGVLSG AVRERI+RAF
Sbjct:   51 IQGIPHLRPAEYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAF 95
The following BLAST results are available for this feature:
BLAST of EL492466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL34_PEA2.855e-1897.7860S ribosomal protein L34 OS=Pisum sativum GN=RPL3... [more]
RL341_ARATH1.085e-1795.5660S ribosomal protein L34-1 OS=Arabidopsis thalian... [more]
RL34_TOBAC1.417e-1795.5660S ribosomal protein L34 OS=Nicotiana tabacum GN=... [more]
RL342_ARATH1.417e-1795.5660S ribosomal protein L34-2 OS=Arabidopsis thalian... [more]
RL343_ARATH1.199e-1691.1160S ribosomal protein L34-3 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank descriptionC0802 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0802, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492466 ID=EL492466; Name=EL492466; organism=Citrus sinensis; type=EST; length=236bp
GACTGCGTAGTGATCCAAGGAATTCCTCACTTGAGACCTGCTGAGTACAA
GAGGTCTAGACTATCTCGAAATAGGAGGACTGTCAACCGTGCCTATGGGG
GTGTATTATCTGGAGGTGCTGTCAGGGAGAGGATTATCCGGGCCTTTTTG
GTGGAGGAGCAGAAGATTGTCAAGAAAGTGCTGAAGATTCAGAAGGCCAA
AGAAAAGCTGGCATCTAAGAGTTACTCAGGACTCAT
back to top