CV886843
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 1.049e-76 Identity = 149/208 (71.63%), Postives = 161/208 (77.40%), Query Frame = -2 Query: 290 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITXXXXXXXXXXXXAWYQTMISDSDYTEFENFSKWLGVSQ 913 GKMRNRRYI+RKGPL+VY EGAKLVKAFRNIPG LAPGGHLGRF+VWTKSAFEKLD IYG FDK SEKK GYVLPR+KMVNADLARIINSDEVQSVV PI+ KRAP+KKNPL+ LNTML+LNPYAKTARRMSLLAEA+RV KPI+ AWYQTMISDSDYTEF+NF+KWLGVSQ Sbjct: 201 GKMRNRRYINRKGPLIVYGTEGAKLVKAFRNIPGIDIINVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVSQ 408
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 8.883e-76 Identity = 143/208 (68.75%), Postives = 160/208 (76.92%), Query Frame = -2 Query: 290 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITXXXXXXXXXXXXAWYQTMISDSDYTEFENFSKWLGVSQ 913 GKMRNRRYISRKGPLVVY EG+K+VKAFRN+PG LAPGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPRAKMVNADLARIINSDE+QSVV PIK + KRA +KKNPLKNLN ML+LNPYAKTA+RMSLLAEAQRV K +T +WY+TMISDSDYTEF+NF+KWLG SQ Sbjct: 199 GKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2) HSP 1 Score: 279.256 bits (713), Expect = 2.188e-74 Identity = 144/208 (69.23%), Postives = 157/208 (75.48%), Query Frame = -2 Query: 290 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITXXXXXXXXXXXXAWYQTMISDSDYTEFENFSKWLGVSQ 913 GKMRNRRYISRKGPLVV+ EGAK+VKAFRN+PG LAPGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPRAKMVNADLARIINSDEVQSVV PIK KRA +KKNPLKNLN M +LNPYAKTA+RMSLLAEA RV K +T AWYQTMISDSDYTEF+NF+KWLG SQ Sbjct: 200 GKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 7.854e-40 Identity = 83/155 (53.55%), Postives = 105/155 (67.74%), Query Frame = -2 Query: 449 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRV 913 GKMRNRR I R+GP V+Y+ E LVKAFRNIPG LAPGGH+GRF +WT+SAF KLD++YG + K ++ K Y LP KM N DL RI+ S E+Q +R +VKR +KKNPLKNL M+RLNPYAKTARR ++L + + + Sbjct: 198 GKMRNRRRIQRRGPCVIYN-ENNGLVKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 351
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.750e-39 Identity = 81/155 (52.26%), Postives = 105/155 (67.74%), Query Frame = -2 Query: 449 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRV 913 GKMRNRR I R+GP V+Y+ E ++KAFRNIPG LAPGGH+GRF +WT+SAF KLD++YG + K ++ K Y LP KM N DL RI+ S E+Q +R +VKR +KKNPLKNL M+RLNPYAKTARR ++L + + + Sbjct: 193 GKMRNRRRIQRRGPCVIYN-ENNGIIKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 346
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 6.649e-39 Identity = 78/153 (50.98%), Postives = 105/153 (68.63%), Query Frame = -2 Query: 455 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQ 913 GKMRNRR I R+GP ++Y+ + ++KAFRNIPG LAPGGH+GRF +WT+SAF KLDE+YG + K + K Y LP KM+N DL+RI+ S E+Q +R + ++ R +KKNPLKNL ML+LNPYAKT RR ++L +A+ Sbjct: 194 GKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5) HSP 1 Score: 161.384 bits (407), Expect = 6.649e-39 Identity = 78/153 (50.98%), Postives = 105/153 (68.63%), Query Frame = -2 Query: 455 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQ 913 GKMRNRR I R+GP ++Y+ + ++KAFRNIPG LAPGGH+GRF +WT+SAF KLDE+YG + K + K Y LP KM+N DL+RI+ S E+Q +R + ++ R +KKNPLKNL ML+LNPYAKT RR ++L +A+ Sbjct: 194 GKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3) HSP 1 Score: 160.614 bits (405), Expect = 1.134e-38 Identity = 78/153 (50.98%), Postives = 105/153 (68.63%), Query Frame = -2 Query: 455 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQ 913 GKMRNRR I R+GP ++Y+ + ++KAFRNIPG LAPGGH+GRF +WT+SAF KLDE+YG + K + K Y LP KM+N DL+RI+ S E+Q +R + ++ R +KKNPLKNL ML+LNPYAKT RR ++L +A+ Sbjct: 194 GKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3) HSP 1 Score: 160.614 bits (405), Expect = 1.134e-38 Identity = 78/153 (50.98%), Postives = 105/153 (68.63%), Query Frame = -2 Query: 455 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQ 913 GKMRNRR I R+GP ++Y+ + ++KAFRNIPG LAPGGH+GRF +WT+SAF KLDE+YG + K + K Y LP KM+N DL+RI+ S E+Q +R + ++ R +KKNPLKNL ML+LNPYAKT RR ++L +A+ Sbjct: 194 GKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4_BOVIN (60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3) HSP 1 Score: 160.614 bits (405), Expect = 1.134e-38 Identity = 78/153 (50.98%), Postives = 105/153 (68.63%), Query Frame = -2 Query: 455 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQ 913 GKMRNRR I R+GP ++Y+ + ++KAFRNIPG LAPGGH+GRF +WT+SAF KLDE+YG + K + K Y LP KM+N DL+RI+ S E+Q +R + ++ R +KKNPLKNL ML+LNPYAKT RR ++L +A+ Sbjct: 194 GKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345 The following BLAST results are available for this feature:
BLAST of CV886843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CV886843 ID=CV886843; Name=CV886843; organism=Citrus sinensis; type=EST; length=914bpback to top |