CV886843

Overview
NameCV886843
Unique NameCV886843
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 1.049e-76
Identity = 149/208 (71.63%), Postives = 161/208 (77.40%), Query Frame = -2
Query:  290 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITXXXXXXXXXXXXAWYQTMISDSDYTEFENFSKWLGVSQ 913
            GKMRNRRYI+RKGPL+VY  EGAKLVKAFRNIPG             LAPGGHLGRF+VWTKSAFEKLD IYG FDK SEKK GYVLPR+KMVNADLARIINSDEVQSVV PI+   KRAP+KKNPL+ LNTML+LNPYAKTARRMSLLAEA+RV           KPI+            AWYQTMISDSDYTEF+NF+KWLGVSQ
Sbjct:  201 GKMRNRRYINRKGPLIVYGTEGAKLVKAFRNIPGIDIINVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINSDEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVSQ 408          
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 8.883e-76
Identity = 143/208 (68.75%), Postives = 160/208 (76.92%), Query Frame = -2
Query:  290 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITXXXXXXXXXXXXAWYQTMISDSDYTEFENFSKWLGVSQ 913
            GKMRNRRYISRKGPLVVY  EG+K+VKAFRN+PG             LAPGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPRAKMVNADLARIINSDE+QSVV PIK + KRA +KKNPLKNLN ML+LNPYAKTA+RMSLLAEAQRV           K +T            +WY+TMISDSDYTEF+NF+KWLG SQ
Sbjct:  199 GKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406          
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 2.188e-74
Identity = 144/208 (69.23%), Postives = 157/208 (75.48%), Query Frame = -2
Query:  290 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRVXXXXXXXXXXXKPITXXXXXXXXXXXXAWYQTMISDSDYTEFENFSKWLGVSQ 913
            GKMRNRRYISRKGPLVV+  EGAK+VKAFRN+PG             LAPGGHLGRF++WTKSAFEKL+ IYG F+K SEKKKGYVLPRAKMVNADLARIINSDEVQSVV PIK   KRA +KKNPLKNLN M +LNPYAKTA+RMSLLAEA RV           K +T            AWYQTMISDSDYTEF+NF+KWLG SQ
Sbjct:  200 GKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407          
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.854e-40
Identity = 83/155 (53.55%), Postives = 105/155 (67.74%), Query Frame = -2
Query:  449 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRV 913
            GKMRNRR I R+GP V+Y+ E   LVKAFRNIPG             LAPGGH+GRF +WT+SAF KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR  +KKNPLKNL  M+RLNPYAKTARR ++L + + +
Sbjct:  198 GKMRNRRRIQRRGPCVIYN-ENNGLVKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 351          
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.750e-39
Identity = 81/155 (52.26%), Postives = 105/155 (67.74%), Query Frame = -2
Query:  449 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQRV 913
            GKMRNRR I R+GP V+Y+ E   ++KAFRNIPG             LAPGGH+GRF +WT+SAF KLD++YG + K ++ K  Y LP  KM N DL RI+ S E+Q  +R    +VKR  +KKNPLKNL  M+RLNPYAKTARR ++L + + +
Sbjct:  193 GKMRNRRRIQRRGPCVIYN-ENNGIIKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILKSQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENI 346          
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4_PONAB (60S ribosomal protein L4 OS=Pongo abelii GN=RPL4 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.649e-39
Identity = 78/153 (50.98%), Postives = 105/153 (68.63%), Query Frame = -2
Query:  455 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQ 913
            GKMRNRR I R+GP ++Y+ +   ++KAFRNIPG             LAPGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R  +KKNPLKNL  ML+LNPYAKT RR ++L +A+
Sbjct:  194 GKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4_HUMAN (60S ribosomal protein L4 OS=Homo sapiens GN=RPL4 PE=1 SV=5)

HSP 1 Score: 161.384 bits (407), Expect = 6.649e-39
Identity = 78/153 (50.98%), Postives = 105/153 (68.63%), Query Frame = -2
Query:  455 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQ 913
            GKMRNRR I R+GP ++Y+ +   ++KAFRNIPG             LAPGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R  +KKNPLKNL  ML+LNPYAKT RR ++L +A+
Sbjct:  194 GKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMINTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4_RAT (60S ribosomal protein L4 OS=Rattus norvegicus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 1.134e-38
Identity = 78/153 (50.98%), Postives = 105/153 (68.63%), Query Frame = -2
Query:  455 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQ 913
            GKMRNRR I R+GP ++Y+ +   ++KAFRNIPG             LAPGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R  +KKNPLKNL  ML+LNPYAKT RR ++L +A+
Sbjct:  194 GKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4_MOUSE (60S ribosomal protein L4 OS=Mus musculus GN=Rpl4 PE=1 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 1.134e-38
Identity = 78/153 (50.98%), Postives = 105/153 (68.63%), Query Frame = -2
Query:  455 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQ 913
            GKMRNRR I R+GP ++Y+ +   ++KAFRNIPG             LAPGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R  +KKNPLKNL  ML+LNPYAKT RR ++L +A+
Sbjct:  194 GKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMMNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
BLAST of CV886843 vs. ExPASy Swiss-Prot
Match: RL4_BOVIN (60S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=2 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 1.134e-38
Identity = 78/153 (50.98%), Postives = 105/153 (68.63%), Query Frame = -2
Query:  455 GKMRNRRYISRKGPLVVYSAEGAKLVKAFRNIPGXXXXXXXXXXXXXLAPGGHLGRFIVWTKSAFEKLDEIYGKFDKGSEKKKGYVLPRAKMVNADLARIINSDEVQSVVRPIKTEVKRAPMKKNPLKNLNTMLRLNPYAKTARRMSLLAEAQ 913
            GKMRNRR I R+GP ++Y+ +   ++KAFRNIPG             LAPGGH+GRF +WT+SAF KLDE+YG + K +  K  Y LP  KM+N DL+RI+ S E+Q  +R  + ++ R  +KKNPLKNL  ML+LNPYAKT RR ++L +A+
Sbjct:  194 GKMRNRRRIQRRGPCIIYNEDNG-IIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAR 345          
The following BLAST results are available for this feature:
BLAST of CV886843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL4_PRUAR1.049e-7671.6360S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4A_ARATH8.883e-7668.7560S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
RL4B_ARATH2.188e-7469.2360S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4A_XENLA7.854e-4053.5560S ribosomal protein L4-A OS=Xenopus laevis GN=rp... [more]
RL4B_XENLA1.750e-3952.2660S ribosomal protein L4-B (Fragment) OS=Xenopus l... [more]
RL4_PONAB6.649e-3950.9860S ribosomal protein L4 OS=Pongo abelii GN=RPL4 P... [more]
RL4_HUMAN6.649e-3950.9860S ribosomal protein L4 OS=Homo sapiens GN=RPL4 P... [more]
RL4_RAT1.134e-3850.9860S ribosomal protein L4 OS=Rattus norvegicus GN=R... [more]
RL4_MOUSE1.134e-3850.9860S ribosomal protein L4 OS=Mus musculus GN=Rpl4 P... [more]
RL4_BOVIN1.134e-3850.9860S ribosomal protein L4 OS=Bos taurus GN=RPL4 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_025E10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T3_E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886843 ID=CV886843; Name=CV886843; organism=Citrus sinensis; type=EST; length=914bp
AATTGAAATTTATCCATAAGATAGTACCATTAAGACAATGAATCCGTCTC
CTAAAACATATAACTCCAATTCTAACATTGAAGAAAATACTTCCACCTAG
CCGATAGAGACAAAAAATGGAGGAAGGAGAAACAAAAGTCTACACATTTC
CCAAATCCACTCATCTTCCTTCCACACATTCTCATCATGACTCAAAAGAG
CCAAAGAGACTACAATTCAACAACAAAATCAGTAAAGATAAACAAAATAT
TGTCTTGAAAACAAAATTAAAAAACCAACAATCAGATTACTGTGAGACAC
CCAACCATTTTGAGAAGTTCTCAAACTCAGTATAATCACTGTCTGAGATC
ATCGTCTGGTACCATGCCTTGCCTGCAGCCTTGATCGCAGCAGCCTCCTC
CTTAGTGATGGGCTTCCTTTTCTTGTCGAGCTTCTCCTTCTTAGCTTTAA
CCCGTTGTGCCTCAGCCAAAAGAGACATCCTCCGAGCAGTCTTAGCATAT
GGGTTCAACCGCAACATCGTATTCAAGTTCTTGAGAGGATTTTTCTTCAT
TGGAGCCCTCTTAACCTCAGTCTTAATCGGCCTTACAACAGACTGCACCT
CATCCGAGTTAATAATCCTAGCCAAATCAGCGTTGACCATCTTAGCACGA
GGCAGCACATAACCCTTCTTCTTCTCGGAACCCTTATCAAACTTACCATA
AATTTCATCAAGCTTCTCAAAAGCCGATTTAGTCCAAACAATAAACCGCC
CAAGATGGCCACCCGGCGCCAGCTTCAACAAGTTCAATCTCTCAACATTC
ACAACCTCAACACCGGGAATGTTCCTAAAAGCCTTGACAAGCTTAGCACC
CTCGGCTGAGTACACAACAAGCGGGCCCTTGCGAGAAATGTAACGCCTAT
TTCTCATTTTACCC
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