EL492464

Overview
NameEL492464
Unique NameEL492464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length274
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6912 contig Csv1_Contig6912:1..274. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492464 vs. ExPASy Swiss-Prot
Match: HBL1_GOSHI (Non-symbiotic hemoglobin 1 OS=Gossypium hirsutum GN=HB1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.983e-31
Identity = 67/74 (90.54%), Postives = 69/74 (93.24%), Query Frame = 1
Query:   46 IFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVTQ 267
            IFEIAPSA+KLFSFLRDSNVPLEQN KLK HAMSVFVMTCESAVQLRKAGKVTVRES LKKLGA HFKYGVV +
Sbjct:   39 IFEIAPSAKKLFSFLRDSNVPLEQNTKLKPHAMSVFVMTCESAVQLRKAGKVTVRESNLKKLGATHFKYGVVDE 112          
BLAST of EL492464 vs. ExPASy Swiss-Prot
Match: HBL1_MEDSA (Non-symbiotic hemoglobin 1 OS=Medicago sativa GN=MHB1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.603e-29
Identity = 64/74 (86.49%), Postives = 69/74 (93.24%), Query Frame = 1
Query:   46 IFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVTQ 267
            IFEIAPSAQKLFSFL+DS VPLEQN KLK HAMSVF+MTCESAVQLRK+GKVTVRES+LKKLGA HFKYGVV +
Sbjct:   39 IFEIAPSAQKLFSFLKDSKVPLEQNTKLKPHAMSVFLMTCESAVQLRKSGKVTVRESSLKKLGANHFKYGVVDE 112          
BLAST of EL492464 vs. ExPASy Swiss-Prot
Match: HBP2_CASGL (Hemoglobin-2 OS=Casuarina glauca GN=HBII PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.094e-29
Identity = 63/74 (85.14%), Postives = 70/74 (94.59%), Query Frame = 1
Query:   46 IFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVTQ 267
            IFEIAPSAQKLFSFL+DSNVPLE+N KLK+HAMSVF+MTCESAVQLRKAGKVTVRES+LKKLGA HFK+GV  +
Sbjct:   39 IFEIAPSAQKLFSFLKDSNVPLERNPKLKSHAMSVFLMTCESAVQLRKAGKVTVRESSLKKLGASHFKHGVADE 112          
BLAST of EL492464 vs. ExPASy Swiss-Prot
Match: HBL_TRETO (Non-symbiotic hemoglobin OS=Trema tomentosa GN=GLB1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.960e-27
Identity = 59/74 (79.73%), Postives = 67/74 (90.54%), Query Frame = 1
Query:   46 IFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVTQ 267
            IFEIAPSA+ LFS+L+DS +PLEQN KLK HAM+VFVMTCESAVQLRKAGKVTVRES LK+LGA+HFK GVV +
Sbjct:   40 IFEIAPSAKNLFSYLKDSPIPLEQNPKLKPHAMTVFVMTCESAVQLRKAGKVTVRESNLKRLGAIHFKNGVVNE 113          
BLAST of EL492464 vs. ExPASy Swiss-Prot
Match: HBL_MAIZE (Non-symbiotic hemoglobin OS=Zea mays GN=HB PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.960e-27
Identity = 57/71 (80.28%), Postives = 67/71 (94.37%), Query Frame = 1
Query:   46 IFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGV 258
            +FEIAPSA+++FSFLRDS+VPLE+N KLKTHAMSVFVMTCE+A QLRKAGKVTVRE+TLK+LGA H +YGV
Sbjct:   43 VFEIAPSAEQMFSFLRDSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGV 113          
BLAST of EL492464 vs. ExPASy Swiss-Prot
Match: HBL_ZEAMP (Non-symbiotic hemoglobin OS=Zea mays subsp. parviglumis GN=HB PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.559e-27
Identity = 57/71 (80.28%), Postives = 67/71 (94.37%), Query Frame = 1
Query:   46 IFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGV 258
            +FEIAPSA+++FSFLRDS+VPLE+N KLKTHAMSVFVMTCE+A QLRKAGKVTVRE+TLK+LGA H +YGV
Sbjct:   43 VFEIAPSAKQMFSFLRDSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGV 113          
BLAST of EL492464 vs. ExPASy Swiss-Prot
Match: HBL2_ORYSJ (Non-symbiotic hemoglobin 2 OS=Oryza sativa subsp. japonica GN=HB2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.559e-27
Identity = 57/71 (80.28%), Postives = 67/71 (94.37%), Query Frame = 1
Query:   46 IFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGV 258
            IFE+APSA ++FSFLR+S+VPLE+N KLKTHAMSVFVMTCE+A QLRKAGKVTVR++TLK+LGA HFKYGV
Sbjct:   47 IFEVAPSASQMFSFLRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHFKYGV 117          
BLAST of EL492464 vs. ExPASy Swiss-Prot
Match: HBL1_ORYSJ (Non-symbiotic hemoglobin 1 OS=Oryza sativa subsp. japonica GN=HB1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.270e-26
Identity = 56/71 (78.87%), Postives = 66/71 (92.96%), Query Frame = 1
Query:   46 IFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGV 258
            IFE+APSA ++FSFLR+S+VPLE+N KLKTHAMSVFVMTCE+A QLRKAGKVTVR++TLK+LGA H KYGV
Sbjct:   44 IFEVAPSASQMFSFLRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHLKYGV 114          
BLAST of EL492464 vs. ExPASy Swiss-Prot
Match: HBL1_ARATH (Non-symbiotic hemoglobin 1 OS=Arabidopsis thaliana GN=AHB1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.827e-26
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 1
Query:   40 VVIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVTQ 267
            + IFEIAP+ +K+FSFLRDS +P EQN KLK HAMSVFVM CESAVQLRK GKVTVRE+TLK+LGA H KYGVV +
Sbjct:   37 IKIFEIAPTTKKMFSFLRDSPIPAEQNPKLKPHAMSVFVMCCESAVQLRKTGKVTVRETTLKRLGASHSKYGVVDE 112          
BLAST of EL492464 vs. ExPASy Swiss-Prot
Match: HBL_HORVU (Non-symbiotic hemoglobin OS=Hordeum vulgare GN=HB PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.304e-26
Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 1
Query:   46 IFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGV 258
            IFEIAPSA+++F FLRDS+VPLE N KLKTHA+SVFVMTCE+A QLRKAGK+TVRE+TLK+LG  H KYGV
Sbjct:   40 IFEIAPSARQMFPFLRDSDVPLETNPKLKTHAVSVFVMTCEAAAQLRKAGKITVRETTLKRLGGTHLKYGV 110          
The following BLAST results are available for this feature:
BLAST of EL492464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
HBL1_GOSHI4.983e-3190.54Non-symbiotic hemoglobin 1 OS=Gossypium hirsutum G... [more]
HBL1_MEDSA1.603e-2986.49Non-symbiotic hemoglobin 1 OS=Medicago sativa GN=M... [more]
HBP2_CASGL2.094e-2985.14Hemoglobin-2 OS=Casuarina glauca GN=HBII PE=3 SV=1[more]
HBL_TRETO1.960e-2779.73Non-symbiotic hemoglobin OS=Trema tomentosa GN=GLB... [more]
HBL_MAIZE1.960e-2780.28Non-symbiotic hemoglobin OS=Zea mays GN=HB PE=2 SV... [more]
HBL_ZEAMP2.559e-2780.28Non-symbiotic hemoglobin OS=Zea mays subsp. parvig... [more]
HBL2_ORYSJ2.559e-2780.28Non-symbiotic hemoglobin 2 OS=Oryza sativa subsp. ... [more]
HBL1_ORYSJ1.270e-2678.87Non-symbiotic hemoglobin 1 OS=Oryza sativa subsp. ... [more]
HBL1_ARATH4.827e-2675.00Non-symbiotic hemoglobin 1 OS=Arabidopsis thaliana... [more]
HBL_HORVU6.304e-2677.46Non-symbiotic hemoglobin OS=Hordeum vulgare GN=HB ... [more]

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Properties
Property NameValue
Genbank descriptionC0782 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0782, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492464 ID=EL492464; Name=EL492464; organism=Citrus sinensis; type=EST; length=274bp
GACTGCGTAGTGATCTTACTCAGGACTCATCATGACTGCGTAGTGATCTT
TGAGATTGCACCATCAGCCCAAAAGCTGTTCTCATTCTTGAGAGACTCAA
ATGTGCCTCTAGAGCAGAACCAGAAGCTCAAGACCCATGCCATGTCTGTT
TTTGTTATGACGTGTGAATCAGCAGTGCAACTGAGGAAAGCAGGCAAAGT
GACAGTAAGAGAATCAACTCTAAAAAAATTAGGAGCTGTCCACTTCAAAT
ATGGTGTTGTTACTCAGGACTCAT
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