FC871901

Overview
NameFC871901
Unique NameFC871901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig115 contig Csv1_Contig115:403..971. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC871901 vs. ExPASy Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.803e-25
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 2 
Query:    2 CPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLSYNNQPAEASCTNADGSASGFVLPNSCL 229
            CPGQ SGV+ISDV Y+DIHGTSATEV VK DCS K+PC  I LEDVKL+Y NQ AE+SC++ADG+  G V P SCL
Sbjct:  318 CPGQVSGVQISDVTYEDIHGTSATEVAVKFDCSPKHPCREIKLEDVKLTYKNQAAESSCSHADGTTEGVVQPTSCL 393
[Close]
BLAST of FC871901 vs. ExPASy Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.521e-19
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 2 
Query:    2 CPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLSYNNQPAEASCTNADGSASGFVLPNSCLK 232
            CP Q SGVK+S+V Y+DIHGTS TEV V LDCS + PCTGI ++DV L   ++PA+ASC NA+GSA+  V    CLK
Sbjct:  323 CPKQESGVKVSNVRYEDIHGTSNTEVAVLLDCSKEKPCTGIVMDDVNLVSVHRPAQASCDNANGSANDVVPFTPCLK 399
The following BLAST results are available for this feature:
BLAST of FC871901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PGLR_PRUPE1.803e-2569.74Polygalacturonase OS=Prunus persica PE=2 SV=1[more]
PGLR6_ARATH2.521e-1959.74Probable polygalacturonase At2g43860 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1DH04FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871901 ID=FC871901; Name=FC871901; organism=Citrus sinensis; type=EST; length=569bp
TTGTCCTGGACAGGCTTCGGGGGTTAAAATCAGTGATGTGATATATCAAG
ATATTCATGGAACATCGGCAACAGAAGTTGGAGTAAAGCTCGATTGCAGT
TCGAAGAATCCATGCACTGGAATTAGCTTGGAGGATGTGAAGCTCAGTTA
CAATAATCAACCAGCTGAAGCTTCCTGTACCAACGCTGATGGATCGGCCT
CTGGATTTGTTCTTCCAAATAGTTGCTTGAAGACTTGAAGTAGTGAAAAA
TATTTGAGTTGAAAAAAAAGAAGGCATAAGAAGCCGATCGTGATTATAAT
ATTAAAGTAAAAAGATATAAGCAGTAGAATTTTGCTGAAGTTACTAAATT
TGTGATAGGTAGCCATTAAAAACAGAAAAAAATCATAGGAAGCCGATCAT
TATACTTTGAACTAAGGTTTTTCGGTTATCTGTAAAACTACGCCCATTGG
GCTTACTTAGAGGCACTTCCTACAATGTGTTGAAAGTATCGCCATCGCTT
TCGCGCGTAGATGTTCATAATGTTATCGAATATATTAATTTACTTTATGA
CAAAAAAAAAAAAAAAAAA
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