CV886833

Overview
NameCV886833
Unique NameCV886833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886833 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 447.973 bits (1151), Expect = 3.059e-125
Identity = 215/278 (77.34%), Postives = 238/278 (85.61%), Query Frame = 1
Query:    1 TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLKQLGWYERVTWEEGLQKTMKWYISNPDWWGDVSGALLPHPRTSMAPAIEGKVDGHDTTFMLKT--NNSSQSRMVVRASKSNSSRQKPFLKFLIYGRTGWIGGLLSKICEKKGIPFEYGK 828
            TDEDA+VGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM+G+ LPIHGDGSNVRSYLYCEDVAEAF+ +LHKGEVGHVYNIGTKKERRV DVA DICKLF+++P+  IKFV+NRPFNDQRYFLD QKLK+LGW ER TWEEGL+KTM WY  NP+WWGDVSGALLPHPR  M P      DG +   +  T     SQ+ MVV + +SN + QKP LKFLIYG+TGWIGGLL KIC+K+GI +EYGK
Sbjct:  139 TDEDALVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGQVLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVGHVYNIGTKKERRVNDVAKDICKLFNMDPEANIKFVDNRPFNDQRYFLDDQKLKKLGWSERTTWEEGLKKTMDWYTQNPEWWGDVSGALLPHPRMLMMPG-GRHFDGSEDNSLAATLSEKPSQTHMVVPSQRSNGTPQKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGK 415          
BLAST of CV886833 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 436.417 bits (1121), Expect = 9.209e-122
Identity = 210/276 (76.09%), Postives = 233/276 (84.42%), Query Frame = 1
Query:    1 TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLKQLGWYERVTWEEGLQKTMKWYISNPDWWGDVSGALLPHPRTSMAPAIEGKVDGHDTTFMLKTNNSSQSRMVVRASKSNSSRQKPFLKFLIYGRTGWIGGLLSKICEKKGIPFEYGK 828
            TDEDA VGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAM GKPLPIHGDGSNVRSYLYCEDVAEAF+ +LHKGEV HVYNIGT +ERRVIDVA DI KLF ++PD+ I++VENRPFNDQRYFLD QKLK+LGW ER  WEEGL+KTM+WY  NP+WWGDVSGALLPHPR  M P  +   DG D     K  + +Q+  VV  +K+  S  K  LKFLIYG+TGW+GGLL K+CEK+GIP+EYGK
Sbjct:  139 TDEDASVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMNGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVNHVYNIGTTRERRVIDVANDISKLFGIDPDSTIQYVENRPFNDQRYFLDDQKLKKLGWCERTNWEEGLRKTMEWYTENPEWWGDVSGALLPHPRMLMMPG-DRHSDGSDEH---KNADGNQTFTVVTPTKAGCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGK 410          
BLAST of CV886833 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 433.721 bits (1114), Expect = 5.969e-121
Identity = 206/276 (74.64%), Postives = 233/276 (84.42%), Query Frame = 1
Query:    1 TDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLNPDTQIKFVENRPFNDQRYFLDVQKLKQLGWYERVTWEEGLQKTMKWYISNPDWWGDVSGALLPHPRTSMAPAIEGKVDGHDTTFMLKTNNSSQSRMVVRASKSNSSRQKPFLKFLIYGRTGWIGGLLSKICEKKGIPFEYGK 828
            TDEDA VGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEK+IPKFILLAM GKPLPIHGDGSNVRSYLYCEDVAEAF+ +LHKGE+GHVYN+GTK+ERRVIDVA DICKLF  +P++ I+FVENRPFNDQRYFLD QKLK+LGW ER  WE+GL+KTM WY  NP+WWGDVSGALLPHPR  M P   G++    +     ++N+ Q+  VV   K+  S  K  LKFLIYG+TGW+GGLL K+CEK+GI +EYGK
Sbjct:  141 TDEDAAVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKMIPKFILLAMSGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEIGHVYNVGTKRERRVIDVARDICKLFGKDPESSIQFVENRPFNDQRYFLDDQKLKKLGWQERTNWEDGLKKTMDWYTQNPEWWGDVSGALLPHPRMLMMPG--GRLSDGSSEKKDVSSNTVQTFTVV-TPKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGK 413          
BLAST of CV886833 vs. ExPASy Swiss-Prot
Match: TGDS_DICDI (dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium discoideum GN=tgds PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.501e-47
Identity = 96/213 (45.07%), Postives = 129/213 (60.56%), Query Frame = 1
Query:   25 NHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGHVYNIGTKKERRVIDVATDICKL-FSLNPDTQ--------------------------------IKFVENRPFNDQRYFLDVQKLKQLGWYERVTWEEGLQKTMKWYISNPDWW 564
            ++E S L PTNPYSA+KAGAE LV +Y +S+ LPVI TR NN+YGP Q+PEK+IPKFI L +  K   IHG G N R+YLY +D+  AFD IL KGE+G+VYNIGT  E   +DVA  I  +  +LN +                                  I ++++RPFND RY ++  KL  LGW + ++WEEG++KT  WY +N ++W
Sbjct:  157 SNEKSILNPTNPYSASKAGAEHLVQSYYKSFKLPVIITRANNIYGPKQYPEKIIPKFINLLLNNKKCTIHGTGKNTRNYLYIDDIVSAFDIILRKGEIGNVYNIGTDFEISNLDVAKKIINISINLNNNNNNNNNNNNNNNNNNNNNNNNNNNDFNIMDYKKFINYIDDRPFNDHRYNINYSKLSNLGWKKSISWEEGIEKTFIWYKNNRNYW 369          
BLAST of CV886833 vs. ExPASy Swiss-Prot
Match: TGDS_HUMAN (dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.243e-43
Identity = 86/194 (44.33%), Postives = 123/194 (63.40%), Query Frame = 1
Query:   31 EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLF-SLNPDTQ----IKFVENRPFNDQRYFLDVQKLKQLGWYERVTWEEGLQKTMKWYISNPDWWGDVSGALLPHP 597
            E+S   PTNPY+++KA AE  V +Y   Y  PV+ TR +NVYGP+Q+PEK+IPKFI L    +   IHG G   R++LY  DV EAF T+L KG+ G +YNIGT  E  V+ +A ++ +L    N +++    + +V +RP ND RY +  +K+  LGW  +V W+EG++KT++WY  N   W +V  AL P P
Sbjct:  156 ESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESEMENWVDYVNDRPTNDMRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYRENFHNWKNVEKALEPFP 349          
BLAST of CV886833 vs. ExPASy Swiss-Prot
Match: TGDS_MOUSE (dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.930e-43
Identity = 85/194 (43.81%), Postives = 120/194 (61.86%), Query Frame = 1
Query:   31 EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLF-----SLNPDTQIKFVENRPFNDQRYFLDVQKLKQLGWYERVTWEEGLQKTMKWYISNPDWWGDVSGALLPHP 597
            E+S   PTNPY+++KA AE  V +Y   Y  PV+ TR +NVYGP+Q+PE++IPKFI L    +   IHG G   R++LY  DV EAF T+L KGE G +YNIGT  E  V+ +A ++ +L          ++ + +V +RP ND RY +  +K+  LGW  +V WEEG++KT++WY  N   W +   AL P P
Sbjct:  156 ESSPKQPTNPYASSKAAAECFVQSYWERYKFPVVITRSSNVYGPHQYPERVIPKFISLLQHNRKCCIHGSGLQRRNFLYAADVVEAFLTVLTKGEPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESETESWVDYVSDRPHNDMRYPMKSEKIHSLGWKPKVPWEEGIKKTVEWYRKNFHNWKNAEKALEPFP 349          
BLAST of CV886833 vs. ExPASy Swiss-Prot
Match: TGDS_BOVIN (dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.527e-43
Identity = 85/194 (43.81%), Postives = 123/194 (63.40%), Query Frame = 1
Query:   31 EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLF-SLNPDTQ----IKFVENRPFNDQRYFLDVQKLKQLGWYERVTWEEGLQKTMKWYISNPDWWGDVSGALLPHP 597
            E+S   PTNPY+++KA AE  V +Y   Y  PV+ TR +NVYGP+Q+PEK+IPKFI L    +   IHG G   R++LY  DV EAF T+L KG+ G +YNIGT  E  V+ +A ++ +L    N +++    + +V++RP ND RY +  +K+  LGW  +V W+EG++KT++WY  N   W +   AL P P
Sbjct:  156 ESSPKQPTNPYASSKAAAECFVQSYWEQYKFPVVITRSSNVYGPHQYPEKVIPKFISLLQHNRKCCIHGTGLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVLQLAKELIQLIKETNSESEMENWVDYVDDRPTNDMRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYRENFHNWKNAEKALEPFP 349          
BLAST of CV886833 vs. ExPASy Swiss-Prot
Match: RFBB_XANCP (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris GN=rfbB PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.742e-41
Identity = 83/186 (44.62%), Postives = 118/186 (63.44%), Query Frame = 1
Query:   31 EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLN--------PDTQIKFVENRPFNDQRYFLDVQKLK-QLGWYERVTWEEGLQKTMKWYISNPDW 561
            E +   P +PYSA+KA ++ LV A+  +YGLPV+TT  +N YGP  FPEKLIP  I  A+ G+PLP++GDG  VR +L+  D  EA  T+L KG VG  YN+G   ER+ I+V   IC L   +         ++QI +V +RP +D+RY +D  KLK +LGW    T+E+G+ +T+ WY++N  W
Sbjct:  148 ETTPYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNCSNNYGPYHFPEKLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAKGRVGETYNVGGNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTDRPGHDRRYAIDASKLKDELGWEPAYTFEQGIAQTVDWYLTNQTW 333          
BLAST of CV886833 vs. ExPASy Swiss-Prot
Match: RFBB_XANCB (dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv. campestris (strain B100) GN=rfbB PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.109e-41
Identity = 83/186 (44.62%), Postives = 117/186 (62.90%), Query Frame = 1
Query:   31 EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLFSLN--------PDTQIKFVENRPFNDQRYFLDVQKLK-QLGWYERVTWEEGLQKTMKWYISNPDW 561
            E +   P +PYSA+KA ++ LV A+  +YGLPV+TT  +N YGP  FPEKLIP  I  A+ G+PLP++GDG  VR +L+  D  EA  T+L KG VG  YN+G   ER+ I+V   IC L   +         ++QI +V +RP +D+RY +D  KLK +LGW    T+E+G+  T+ WY++N  W
Sbjct:  148 ETTPYAPNSPYSASKAASDHLVRAFHHTYGLPVLTTNCSNNYGPYHFPEKLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAIRTVLAKGRVGETYNVGGNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTDRPGHDRRYAIDASKLKDELGWEPAYTFEQGIALTVDWYLTNQTW 333          
BLAST of CV886833 vs. ExPASy Swiss-Prot
Match: RFBB_ECOLI (dTDP-glucose 4,6-dehydratase OS=Escherichia coli (strain K12) GN=rfbB PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 1.042e-40
Identity = 87/192 (45.31%), Postives = 124/192 (64.58%), Query Frame = 1
Query:   31 EASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMKGKPLPIHGDGSNVRSYLYCEDVAEAFDTILHKGEVGHVYNIGTKKERRVIDVATDICKLF------SLNPDTQIKFVENRPFNDQRYFLDVQKL-KQLGWYERVTWEEGLQKTMKWYISNPDWWGDV-SGA 582
            E +   P++PYSA+KA ++ LV A+ R+YGLP I T  +N YGP  FPEKLIP  IL A++GK LPI+G G  +R +LY ED A A  T++ +G+ G  YNIG   E++ IDV   IC L         +   QI +V +RP +D+RY +D +K+ + LGW  + T+E G++KT++WY+SN  W  +V SGA
Sbjct:  157 ETTAYAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKALPIYGKGDQIRDWLYVEDHARALYTVVTEGKAGETYNIGGHNEKKNIDVVLTICDLLDEIVPKEKSYREQITYVADRPGHDRRYAIDAEKIGRALGWKPQETFESGIRKTVEWYLSNTKWVDNVKSGA 348          
The following BLAST results are available for this feature:
BLAST of CV886833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RHM1_ARATH3.059e-12577.34Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
RHM3_ARATH9.209e-12276.09Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM2_ARATH5.969e-12174.64Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]
TGDS_DICDI1.501e-4745.07dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium di... [more]
TGDS_HUMAN2.243e-4344.33dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=... [more]
TGDS_MOUSE2.930e-4343.81dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=... [more]
TGDS_BOVIN6.527e-4343.81dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TG... [more]
RFBB_XANCP2.742e-4144.62dTDP-glucose 4,6-dehydratase OS=Xanthomonas campes... [more]
RFBB_XANCB6.109e-4144.62dTDP-glucose 4,6-dehydratase OS=Xanthomonas campes... [more]
RFBB_ECOLI1.042e-4045.31dTDP-glucose 4,6-dehydratase OS=Escherichia coli (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_025E05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T3_E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886833 ID=CV886833; Name=CV886833; organism=Citrus sinensis; type=EST; length=828bp
ACTGATGAGGATGCCGTGGTGGGGAACCATGAGGCTTCTCAGCTTTTGCC
GACAAACCCTTATTCTGCCACTAAAGCTGGGGCCGAGATGCTTGTCATGG
CCTACGGGCGTTCGTATGGCTTGCCTGTAATTACTACTAGAGGAAACAAT
GTGTATGGGCCCAATCAATTTCCTGAAAAGCTGATTCCAAAATTCATCCT
CTTGGCTATGAAAGGAAAGCCTCTTCCTATTCATGGGGATGGATCAAATG
TGAGGAGTTATCTCTACTGTGAGGATGTTGCTGAGGCATTTGATACTATT
CTCCACAAAGGAGAAGTAGGCCATGTGTACAATATTGGGACGAAGAAAGA
AAGGAGAGTGATTGATGTGGCCACAGACATCTGCAAACTTTTCTCTTTGA
ACCCAGATACTCAGATTAAGTTTGTGGAGAATAGGCCATTTAATGACCAG
AGGTATTTCTTGGATGTTCAAAAGCTGAAACAATTAGGTTGGTATGAGCG
GGTTACCTGGGAAGAGGGTCTGCAAAAGACAATGAAATGGTACATCAGCA
ATCCTGATTGGTGGGGTGATGTTAGTGGTGCTCTTCTCCCTCATCCAAGA
ACGTCGATGGCACCTGCAATTGAAGGGAAAGTTGATGGACATGATACTAC
TTTCATGCTCAAGACAAATAATTCTAGCCAGAGCCGAATGGTGGTTCGAG
CTTCCAAGAGCAATTCCTCTAGACAGAAGCCATTCCTGAAGTTCTTGATT
TATGGGAGAACCGGGTGGATAGGGGGCCTTCTTTCGAAGATTTGTGAAAA
GAAAGGGATACCCTTCGAGTATGGAAAG
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