CV886828

Overview
NameCV886828
Unique NameCV886828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886828 vs. ExPASy Swiss-Prot
Match: CTDSL_CHICK (CTD small phosphatase-like protein OS=Gallus gallus GN=NFI1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.011e-15
Identity = 46/106 (43.40%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  510 ECDGKPKINYVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 827
            E DG   I+ V V +RP + EFL+++ E  + VLFTA L  YA P+ D +DR  +F  RL+R S V      +VKDLS L ++L +V++VDN+P S++  P N +P
Sbjct:  134 EIDGT--IHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCV-FHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVP 236          
BLAST of CV886828 vs. ExPASy Swiss-Prot
Match: CTDSL_MOUSE (CTD small phosphatase-like protein OS=Mus musculus GN=Ctdspl PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.252e-15
Identity = 45/106 (42.45%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  510 ECDGKPKINYVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 827
            E DG   I+ V V +RP + EFL+++ +  + VLFTA L  YA P+ D +DR  +F  RL+R S V      +VKDLS L ++L +V++VDN+P S++  P N +P
Sbjct:  135 EIDGT--IHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCV-FHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVP 237          
BLAST of CV886828 vs. ExPASy Swiss-Prot
Match: CTDSL_HUMAN (CTD small phosphatase-like protein OS=Homo sapiens GN=CTDSPL PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.252e-15
Identity = 45/106 (42.45%), Postives = 67/106 (63.21%), Query Frame = 3
Query:  510 ECDGKPKINYVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 827
            E DG   I+ V V +RP + EFL+++ +  + VLFTA L  YA P+ D +DR  +F  RL+R S V      +VKDLS L ++L +V++VDN+P S++  P N +P
Sbjct:  135 EIDGT--IHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRARLFRESCV-FHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVP 237          
BLAST of CV886828 vs. ExPASy Swiss-Prot
Match: CTDS1_MOUSE (Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Mus musculus GN=Ctdsp1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.118e-14
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 3
Query:  510 ECDGKPKINYVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 827
            E DG   ++ V V +RP + EFL+++ E  + VLFTA L  YA P+ D +D+   F  RL+R S V      +VKDLS L +DL RV+++DN+P S++  P N +P
Sbjct:  119 EIDGV--VHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCV-FHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVP 221          
BLAST of CV886828 vs. ExPASy Swiss-Prot
Match: CTDS1_HUMAN (Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 OS=Homo sapiens GN=CTDSP1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.118e-14
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 3
Query:  510 ECDGKPKINYVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 827
            E DG   ++ V V +RP + EFL+++ E  + VLFTA L  YA P+ D +D+   F  RL+R S V      +VKDLS L +DL RV+++DN+P S++  P N +P
Sbjct:  119 EIDGV--VHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCV-FHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVP 221          
BLAST of CV886828 vs. ExPASy Swiss-Prot
Match: CTDS2_MOUSE (Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 OS=Mus musculus GN=Ctdsp2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.245e-14
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 3
Query:  540 VTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 827
            V V +RP + EFL+++ E  + VLFTA L  YA P+ D +DR  +F  RL+R + V  +   +VKDLS L +DL + V++DN+P S++  P N +P
Sbjct:  137 VYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFREACVFHQ-GCYVKDLSRLGRDLRKTVILDNSPASYIFHPENAVP 231          
BLAST of CV886828 vs. ExPASy Swiss-Prot
Match: CTDS2_HUMAN (Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2 OS=Homo sapiens GN=CTDSP2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.245e-14
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 3
Query:  540 VTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 827
            V V +RP + EFL+++ E  + VLFTA L  YA P+ D +DR  +F  RL+R S V  +   +VKDLS L +DL + +++DN+P S++  P N +P
Sbjct:  138 VYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQ-GCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVP 232          
BLAST of CV886828 vs. ExPASy Swiss-Prot
Match: CTSL2_DICDI (CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum GN=ctdspl2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.753e-13
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 3
Query:  552 ERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 827
            +RP   EFL K+++  ++++FTA  E YA  L++ ID  N    RLYR S V  +   ++KDLS L +DL +VV++DN+P SF  Q  NGIP
Sbjct:  431 KRPFFEEFLHKVSDIFEVIIFTASQEVYANKLLNMIDPNNKIKYRLYRDSCVYVD-GNYLKDLSVLGRDLKQVVIIDNSPQSFGFQVDNGIP 521          
BLAST of CV886828 vs. ExPASy Swiss-Prot
Match: YA22_SCHPO (Uncharacterized protein C2F7.02c OS=Schizosaccharomyces pombe GN=SPAC2F7.02c PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 37/96 (38.54%), Postives = 62/96 (64.58%), Query Frame = 3
Query:  540 VTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 827
            V V +RPG+ EFLKK+ +  ++V+FTA L  YA P++D +D  ++   RL+R +  + E    VKDLS L ++L   +++DN+P S++  P + +P
Sbjct:  194 VRVVKRPGVDEFLKKMGDMFEIVVFTASLAKYADPVLDMLDHSHVIRHRLFREACCNYE-GNFVKDLSQLGRNLEDSIIIDNSPSSYIFHPSHAVP 288          
BLAST of CV886828 vs. ExPASy Swiss-Prot
Match: CTDS_DICDI (Probable C-terminal domain small phosphatase OS=Dictyostelium discoideum GN=fcpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.133e-13
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 3
Query:  531 INYVTVFERPGLHEFLKKLAEFADLVLFTAGLEGYARPLVDKIDRENLFSLRLYRPSTVSTEYREHVKDLSCLSKDLCRVVLVDNNPFSFLLQPLNGIP 827
            I+ V V +RP + +FL+ +AE  ++V+FTA L  YA P++D +D   +   RL+R S        +VKDLS L +DL   ++VDN+P S+L  P N IP
Sbjct:  170 IHQVYVVKRPFVDDFLRAIAEKFEIVVFTASLAKYADPVLDFLDTGRVIHYRLFRES-CHNHKGNYVKDLSRLGRDLKSTIIVDNSPSSYLFHPENAIP 267          
The following BLAST results are available for this feature:
BLAST of CV886828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CTDSL_CHICK1.011e-1543.40CTD small phosphatase-like protein OS=Gallus gallu... [more]
CTDSL_MOUSE2.252e-1542.45CTD small phosphatase-like protein OS=Mus musculus... [more]
CTDSL_HUMAN2.252e-1542.45CTD small phosphatase-like protein OS=Homo sapiens... [more]
CTDS1_MOUSE1.118e-1442.45Carboxy-terminal domain RNA polymerase II polypept... [more]
CTDS1_HUMAN1.118e-1442.45Carboxy-terminal domain RNA polymerase II polypept... [more]
CTDS2_MOUSE7.245e-1442.71Carboxy-terminal domain RNA polymerase II polypept... [more]
CTDS2_HUMAN7.245e-1442.71Carboxy-terminal domain RNA polymerase II polypept... [more]
CTSL2_DICDI2.753e-1344.57CTD small phosphatase-like protein 2 OS=Dictyostel... [more]
YA22_SCHPO4.696e-1338.54Uncharacterized protein C2F7.02c OS=Schizosaccharo... [more]
CTDS_DICDI6.133e-1341.41Probable C-terminal domain small phosphatase OS=Di... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_025E02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T7_E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886828 ID=CV886828; Name=CV886828; organism=Citrus sinensis; type=EST; length=904bp
ATTTTGGAGCTCCCAATTTTGTGGGCTTTACTTTAATGGCAGAAATGGAG
ATGGGTCAGATCGAAGTGTGTGAGCCGAGGTCCGTACAAGTATGGCGAGG
CTTCGTTAGTTGGGTGGGGTTTATTTTGCAGGTTTTCATTCAGATCCTGA
GAGGCACTCCTTCGTTTTTTTCGTACTTAGTTGGCCTCAGTAGCAGTAGT
TACAGCTCTCTTCTTGCTTCTTCTTCTTCTTCTGCTTCGCCTTCTTTTAA
GCCATTGCCTGTTGTTGAACTCCCACTTCAAGAGTCTTCTGCGGCGGCCG
CTGCCCACGTCAGCTTTGATGGTGGTCTTAGTGATGATTGTGGCGGCGGC
GGCGATGGGCAAGAAATTGAGAAGCTCACTGTGGTTCTTGACTTGGATGA
AACCCTAGTTTGTGCTTATGAGACTTCTAGTTTGCCTGCCATTATTCGTG
CTCAAGCAGCAGAAGCAGGGTTGAAGTTGTTTGAATTGGAATGCGTGTCA
TCAGACAAGGAGTGTGATGGAAAACCAAAGATTAATTATGTTACCGTATT
TGAACGACCGGGGCTGCACGAATTCTTGAAAAAACTTGCTGAATTTGCAG
ACCTTGTTCTCTTCACTGCTGGCCTTGAAGGTTATGCTAGACCACTTGTC
GACAAAATAGACAGGGAGAATCTATTTAGCCTTCGCCTTTATCGACCTTC
AACTGTTAGCACGGAATATCGAGAACATGTCAAGGATCTGTCTTGTTTAT
CGAAAGATCTCTGCCGAGTTGTACTTGTAGATAACAATCCATTCAGTTTC
TTGCTGCAACCATTAAATGGAATCCCATGCATTCCATTCTCTACCGGACA
ACCATATGATAATCAGCTTTTGGAGGTCCTTCTCCCTCTCCTTAATCATC
TCTC
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