CV886826

Overview
NameCV886826
Unique NameCV886826
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886826 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.329e-28
Identity = 60/137 (43.80%), Postives = 88/137 (64.23%), Query Frame = -2
Query:  210 PNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGIFFETRYANSMGFMKAEPMSGCAEVLRLYQEED 620
            PN   + ++GRVYCDTC+AGF T  T YIAGAKV++ECK   + ++  + +G TD+TGTY I + + H++ +C  VLV+SP+ DC  V   R+R+ V+LT   GI    R AN +G+ K  P+  CA +L+    +D
Sbjct:   30 PNLPDYVIQGRVYCDTCRAGFVTNVTEYIAGAKVRLECKHFGTGKLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGYFKDVPLPVCAALLKQLDSDD 166          
BLAST of CV886826 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26
Identity = 55/129 (42.64%), Postives = 83/129 (64.34%), Query Frame = -2
Query:  228 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPG---RERSRVILTSYNGIFFETRYANSMGFMKAEPMSGCAEVLR 605
            F VEG+VYCD C+  F T  +TY+ GAKV +EC++R+   ++YS + +TD +GTY+I V  DH++++C+  L  S   DC  V+     ++ +R+ LT  NGI    R AN +GFMK +P+  CA+ LR
Sbjct:   27 FFVEGKVYCDNCRTQFVTKLSTYMKGAKVSLECRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSARISLTKNNGISTPVRLANPLGFMKKKPLPECAKALR 155          
BLAST of CV886826 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.571e-26
Identity = 54/128 (42.19%), Postives = 80/128 (62.50%), Query Frame = -2
Query:  231 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGIFFETRYANSMGFMKAEPMSGCAEVL 614
            P+ F VEG+VYCDTC+  FET  +  + GA VK++C++  +    +S EG TD  G YK+ V+ DH++ +C+  +V SP+ DCK    G E++R+  +   GI    R+AN + FMKAE + GC E L
Sbjct:   24 PEVFDVEGKVYCDTCRVQFETKLSENLEGATVKLQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIECSDNVGIHNAVRFANPLFFMKAESVQGCKEAL 151          
BLAST of CV886826 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.620e-25
Identity = 56/133 (42.11%), Postives = 77/133 (57.89%), Query Frame = -2
Query:  210 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGIFFE-TRYANSMGFMKAEPMSGCAEVLRLYQEED 605
            F V GRVYCD C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS NGI  +  RYAN + F + EP+  C  +L+ Y   D
Sbjct:    6 FVVTGRVYCDPCRAGFETNVSHNVQGATVAVDCRPFNGGESKLKAEATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAFFRKEPLKECGGILQAYDLRD 138          
BLAST of CV886826 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.245e-23
Identity = 54/129 (41.86%), Postives = 75/129 (58.14%), Query Frame = -2
Query:  222 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGIFFE-TRYANSMGFMKAEPMSGCAEVLRLY 605
            F V GRVYCD C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS  GI  +  RYAN + F + EP+  C  +L+ Y
Sbjct:    6 FVVTGRVYCDPCRAGFETNVSHNVEGATVAVDCRPFDGGESKLKAEATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAFFRKEPLKECGGILQAY 134          
BLAST of CV886826 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 54/136 (39.71%), Postives = 80/136 (58.82%), Query Frame = -2
Query:  207 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAP---GRERSRVILTSYNGIFFETRYANSMGFMKAEPMSGCAEVLRLYQEEDV 605
            F V+G VYCDTC+  F T  +T + GA VK+EC++  +    +  E  TD  G Y I V+ D +D +C+  LV SP ++C  V+     ++ ++V LTS NG   + R AN++GFM+ EP+  C EVL+     DV
Sbjct:   30 FKVQGMVYCDTCRIQFMTRISTIMEGATVKLECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNNGEASDIRSANALGFMRKEPLKECPEVLKELDLYDV 165          
BLAST of CV886826 vs. ExPASy Swiss-Prot
Match: ALL1_OLEEU (Major pollen allergen OS=Olea europaea PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 45/130 (34.62%), Postives = 75/130 (57.69%), Query Frame = -2
Query:  234 RPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGIFFETRYANSMGFMKAEPMSGCAEV 623
            +P    F ++G+VYCDTC+AGF T  + +I GA ++++CKD+++  V ++  G T + G Y +LV  DH+++ C+  L+SS + DC  +         +    N +   TR  N +GF K E +  CA+V
Sbjct:    5 QPPVSQFHIQGQVYCDTCRAGFITELSEFIPGASLRLQCKDKENGDVTFTEVGYTRAEGLYSMLVERDHKNEFCEITLISSGRKDCNEIPTEGWAKPSLKFKLNTVNGTTRTVNPLGFFKKEALPKCAQV 134          
BLAST of CV886826 vs. ExPASy Swiss-Prot
Match: LIGV1_LIGVU (Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.143e-19
Identity = 45/133 (33.83%), Postives = 78/133 (58.65%), Query Frame = -2
Query:  234 RPNPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPG---RERSRVILTSYNGIFFETRYANSMGFMKAEPMSGCAEV 623
            +P    F ++G+VYCDTC+A F T  + +I GA V+++CKD ++ +V ++  G T + G Y +L+  DH+++ C+  L+SS + DC  +      +   + +L + NG    TR  N +GF+K E +  C +V
Sbjct:    5 QPPVSQFYIQGQVYCDTCRARFITELSEFIPGAGVRLQCKDGENGKVTFTEVGYTKAEGLYNMLIERDHKNEFCEITLISSSRKDCDEIPTEGWVKPSLKFVLNTVNG---TTRTINPLGFLKKEVLPKCPQV 134          
BLAST of CV886826 vs. ExPASy Swiss-Prot
Match: PLAL1_PLALA (Major pollen allergen Pla l 1 OS=Plantago lanceolata PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 45/130 (34.62%), Postives = 69/130 (53.08%), Query Frame = -2
Query:  243 NPKPFSVEGRVYCDTCQA-GFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTV---APGR-ERSRVILTSYNGIFFETRYANSMGFMKAEPMSGC 617
            +P  F VEG VYC+ C +       +  +AGA+V+++CKD  S +V+YS  G+TD  G Y++ V   H+D  C+  LV S + DC  +   A G  + S+V L+    I  +TR+   + F       GC
Sbjct:    5 HPAKFHVEGEVYCNVCHSRNLINELSERMAGAQVQLDCKD-DSKKVIYSIGGETDQDGVYRLPVVGYHED--CEIKLVKSSRPDCSEIPKLAKGTIQTSKVDLSKNTTITEKTRHVKPLSFRAKTDAPGC 131          
The following BLAST results are available for this feature:
BLAST of CV886826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSC13_MAIZE8.329e-2843.80Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
OLEE1_BETVE2.680e-2642.64Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
LAT52_SOLLC4.571e-2642.19Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
PHLB_PHLPR8.620e-2542.11Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
LOLB_LOLPR1.245e-2341.86Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
CHE1_CHEAL3.066e-2239.71Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
ALL1_OLEEU9.862e-2134.62Major pollen allergen OS=Olea europaea PE=1 SV=2[more]
LIGV1_LIGVU4.143e-1933.83Major pollen allergen Lig v 1 OS=Ligustrum vulgare... [more]
PLAL1_PLALA1.427e-1134.62Major pollen allergen Pla l 1 OS=Plantago lanceola... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_025E01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T7_E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886826 ID=CV886826; Name=CV886826; organism=Citrus sinensis; type=EST; length=741bp
TTTTTTTTTTTTTTTTTAAGCAGCACCAGCATATAAATAAATTAATAGAG
TACACGTCCTTTAACAACAAATTAAGAATTCTCTAAACATAGAAACAACA
CAGCCATCCAGGCACTACTAATAAAAGAAACAGTATGATAGCTGGGCCAA
CACAAAGCTTAAACAAATGGAAAGCGATAGAAAAAACCATGCCACACCAT
TCTCTACACATCCTCCTCCTGATATAGCCTGAGAACCTCAGCACAGCCAG
ACATGGGCTCTGCCTTCATGAAGCCCATTGAATTGGCATATCGGGTTTCA
AAAAAAATGCCGTTGTAACTGGTCAAGATCACACGGGAACGCTCACGCCC
TGGGGCAACTGTTTTGCAGTCATTCTGGGGGCTGCTAACGAGGACAGCAT
CGCAAAGTTGATCCTGATGGTCTTCTGAAACGAGGATCTTATATGTTCCA
GTTGAGTCTGTTTTCCCTTCCCTGCTATATACTACTTGCATTGACTTCCT
GTCTTTGCATTCAACCTTCACCTTGGCACCGGCGATGTAGGTGGTGGCGG
GGGTCTCGAAACCGGCTTGGCAGGTGTCGCAATACACGCGTCCTTCAACC
GAAAACGGTTTAGGGTTGGGCCGGACCGCGCTCACCAAAACCGGCAGCAC
GCATAGAGCGATCAACAACAATATTCTAGCCATTGTCTTATGGGAGATGA
AGGAAGCTGAACAAGATTGAATATTGAGAGCAAATGAGCCT
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