CV886819
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RK4_ARATH (50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=1 SV=2) HSP 1 Score: 303.138 bits (775), Expect = 1.407e-81 Identity = 150/201 (74.63%), Postives = 172/201 (85.57%), Query Frame = -2 Query: 310 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAE-NTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGV 909 K+GETYLDLK+A DTARAVVHRA++TD+ NKRRGTASTLTRGEVRGGG KPYSQKKTG ARRGS RTPLRPGGGVVFGP+P+DWSIKIN+KEK+L AE IVVEEF KFE+PKTK+F+ AM+RWGLDPK+KA FL+++V ENV KSSRNIGTL+MLTPRTLNLFDIL+A+ LVLTP+ V+FLN RYGV Sbjct: 63 KVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFLNARYGV 263
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RK4_TOBAC (50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1) HSP 1 Score: 298.13 bits (762), Expect = 4.527e-80 Identity = 151/199 (75.88%), Postives = 169/199 (84.92%), Query Frame = -2 Query: 313 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 909 ++G T L+LKSA DTARAVVHR L TD++N+RRGTASTLTR EVRGGG KPY QKKTGRARRGSNRTPLRPGGGVVFGPKP+DWS+KINKKEKRL +ENTIVVEEF+ KFE+PKTKEFI+ MRRWGLDPK+K+ FL+ +VS+NV SSRNIGTLKMLTPRTLNLFDILD+E LVLT S VDFLN RYG Sbjct: 57 EVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRL--AISTALSSASENTIVVEEFNDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLKMLTPRTLNLFDILDSEKLVLTKSAVDFLNERYG 253
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RK4_SPIOL (50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea GN=RPL4 PE=1 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 4.848e-74 Identity = 136/200 (68.00%), Postives = 162/200 (81.00%), Query Frame = -2 Query: 310 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGV 909 K+GET+L+LK+A P+ ARAVVHR LIT +QNKRRGTASTLTR EVRGGGRKPY QKKTGRARRGS +PLRPGGGV+FGPKPRDW+IK+NKKE+RL N+ VVEEF FE+PKTK+FI AM+RWGLDP +K+ F +M++ ENVEKS RNI TLK+LTPR+LNLFD+L+AE LV T T+ +LN RYGV Sbjct: 64 KVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVG--NSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVLNAEKLVFTEGTIQYLNQRYGV 261
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_THEEB (50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplD PE=3 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 4.133e-49 Identity = 99/197 (50.25%), Postives = 133/197 (67.51%), Query Frame = -2 Query: 313 GETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 903 GE LDL +A P+TA +VHRAL+ + N R+GT ST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+S K+N+KE+RL E+ IVV++F RPKTKE + A++RWG++P+QK L +++E V S+RN+ TLK+L LN+FD+L A+ +V T + + YG Sbjct: 15 GEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTALMSRVEDLIVVQDFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLKLLRADQLNVFDLLYADRIVATTGAIAKIQEVYG 209
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_CYAP4 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplD PE=3 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 5.968e-48 Identity = 98/199 (49.25%), Postives = 133/199 (66.83%), Query Frame = -2 Query: 313 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 909 ++GET L+L+ A + A +VHRAL M N R+GTAST TR EVRGGGRKP+ QK TGRAR GSNR+PL GGGV+FGPKPRD+SIK+N KE+RL +++ IVVE+F K RPKTKE A+ RWG+ P K +V + + + S+RNI T+K++ +LN+FD+L+A+ +V T + + YG Sbjct: 13 EVGETALELRVAKAENAAHIVHRALRRQMANARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSIKMNYKERRL--ALRTALISRSDSLIVVEDFSDKLPRPKTKELAAAIARWGVQPNDKVLLIVADKQDTIYLSARNIATVKLIQATSLNVFDLLNADWIVATVEALGKIQEVYG 209
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_NOSP7 (50S ribosomal protein L4 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplD PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 8.617e-47 Identity = 95/200 (47.50%), Postives = 136/200 (68.00%), Query Frame = -2 Query: 316 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV--SENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 909 ++GET +L+ A +TA +VHRAL+ + N R+G AST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KE+RL ++ IVVEEF + RPKTK+ + A+ RWG+ P+ KA ++ E+ ++NV S+RNI LK++ LN+FD+L A+ +V+T S ++ + Y Sbjct: 13 QVGETTFELRVAKEETASHIVHRALVRQLTNARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKLNRKERRL--ALRTAFVGRIDDLIVVEEFSTELSRPKTKDLVAALARWGVVPESKALLILSEIADTDNVYLSARNIENLKLIAANQLNVFDLLHADKIVVTASALEKIQEVY 210
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_TRIEI (50S ribosomal protein L4 OS=Trichodesmium erythraeum (strain IMS101) GN=rplD PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 9.528e-46 Identity = 94/199 (47.24%), Postives = 133/199 (66.83%), Query Frame = -2 Query: 313 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 909 ++G+ L+L+ A ++A +VHR+L M N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+S K+N+KEKRL +E+ IV+E+ +F +PKTKE ++A+ RWG+D + K ++ E ENV S RNI LK++ LN++DIL A+ ++ T + + + YG Sbjct: 13 EVGQATLNLRVAKEESAAHIVHRSLRLQMANNRQGTASTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSHKMNRKEKRL--ALSTAFQSRSEDLIVIEDLSEQFTKPKTKELVQAITRWGIDIQAKIVLVLPEKQENVYLSGRNIAKLKIILANNLNIYDILAADKIIATVTAIAKIQEVYG 209
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_ANASP (50S ribosomal protein L4 OS=Anabaena sp. (strain PCC 7120) GN=rplD PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 9.528e-46 Identity = 93/198 (46.97%), Postives = 130/198 (65.66%), Query Frame = -2 Query: 316 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 909 +IG+ +L+ A TA +VHRAL+ N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KE+RL ++ I+VEEF + RPKTK+ + A RWG +P+ K ++ E ENV S+RNI LK++ LN++D+L A+ +V+T S ++ + Y Sbjct: 13 QIGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRL--ALRTAFVSRIDDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLIAADQLNVYDLLHADKIVVTTSALEKIQEVY 208
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_CYAP7 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7424) GN=rplD PE=3 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 1.244e-45 Identity = 93/187 (49.73%), Postives = 128/187 (68.45%), Query Frame = -2 Query: 349 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 909 ++G+T L+LK A +TA ++HRA++ + N R+G AST TR EVRGGGRKP+ QK TGRAR GSNR+PL GGGV+FGPKPRD+S K+N+KE+RL AEN I+VE F + +PKTKE A+ RWG+ K K ++ E+ EN+ S+RNI +K++ ++N++DIL A LV T Sbjct: 13 EVGQTSLELKVAKEETASHILHRAVVRHLANARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTALNSKAENLIIVENFAPELPQPKTKELALALTRWGVTEKDKVLLILSEIPENISLSARNICNVKLIRADSINVYDILSASKLVAT 197
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_ANAVT (50S ribosomal protein L4 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplD PE=3 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 1.244e-45 Identity = 92/198 (46.46%), Postives = 130/198 (65.66%), Query Frame = -2 Query: 316 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 909 ++G+ +L+ A TA +VHRAL+ N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL GGGV+FGPKPRD+ +K+N+KE+RL ++ I+VEEF + RPKTK+ + A RWG +P+ K ++ E ENV S+RNI LK++ LN++D+L A+ +V+T S ++ + Y Sbjct: 13 QVGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRL--ALRTALVSRIDDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLIAADQLNVYDLLHADKIVVTTSALEKIQEVY 208 The following BLAST results are available for this feature:
BLAST of CV886819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV886819 ID=CV886819; Name=CV886819; organism=Citrus sinensis; type=EST; length=910bpback to top |