CV886819

Overview
NameCV886819
Unique NameCV886819
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RK4_ARATH (50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=1 SV=2)

HSP 1 Score: 303.138 bits (775), Expect = 1.407e-81
Identity = 150/201 (74.63%), Postives = 172/201 (85.57%), Query Frame = -2
Query:  310 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAE-NTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGV 909
            K+GETYLDLK+A  DTARAVVHRA++TD+ NKRRGTASTLTRGEVRGGG KPYSQKKTG ARRGS RTPLRPGGGVVFGP+P+DWSIKIN+KEK+L           AE   IVVEEF  KFE+PKTK+F+ AM+RWGLDPK+KA FL+++V ENV KSSRNIGTL+MLTPRTLNLFDIL+A+ LVLTP+ V+FLN RYGV
Sbjct:   63 KVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDILNADKLVLTPAAVEFLNARYGV 263          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RK4_TOBAC (50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 4.527e-80
Identity = 151/199 (75.88%), Postives = 169/199 (84.92%), Query Frame = -2
Query:  313 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 909
            ++G T L+LKSA  DTARAVVHR L TD++N+RRGTASTLTR EVRGGG KPY QKKTGRARRGSNRTPLRPGGGVVFGPKP+DWS+KINKKEKRL           +ENTIVVEEF+ KFE+PKTKEFI+ MRRWGLDPK+K+ FL+ +VS+NV  SSRNIGTLKMLTPRTLNLFDILD+E LVLT S VDFLN RYG
Sbjct:   57 EVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRL--AISTALSSASENTIVVEEFNDKFEKPKTKEFIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLKMLTPRTLNLFDILDSEKLVLTKSAVDFLNERYG 253          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RK4_SPIOL (50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea GN=RPL4 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.848e-74
Identity = 136/200 (68.00%), Postives = 162/200 (81.00%), Query Frame = -2
Query:  310 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYGV 909
            K+GET+L+LK+A P+ ARAVVHR LIT +QNKRRGTASTLTR EVRGGGRKPY QKKTGRARRGS  +PLRPGGGV+FGPKPRDW+IK+NKKE+RL             N+ VVEEF   FE+PKTK+FI AM+RWGLDP +K+ F +M++ ENVEKS RNI TLK+LTPR+LNLFD+L+AE LV T  T+ +LN RYGV
Sbjct:   64 KVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVG--NSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVLNAEKLVFTEGTIQYLNQRYGV 261          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_THEEB (50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplD PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.133e-49
Identity = 99/197 (50.25%), Postives = 133/197 (67.51%), Query Frame = -2
Query:  313 GETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 903
            GE  LDL +A P+TA  +VHRAL+  + N R+GT ST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+S K+N+KE+RL            E+ IVV++F     RPKTKE + A++RWG++P+QK   L  +++E V  S+RN+ TLK+L    LN+FD+L A+ +V T   +  +   YG
Sbjct:   15 GEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTALMSRVEDLIVVQDFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLKLLRADQLNVFDLLYADRIVATTGAIAKIQEVYG 209          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_CYAP4 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplD PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.968e-48
Identity = 98/199 (49.25%), Postives = 133/199 (66.83%), Query Frame = -2
Query:  313 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 909
            ++GET L+L+ A  + A  +VHRAL   M N R+GTAST TR EVRGGGRKP+ QK TGRAR GSNR+PL  GGGV+FGPKPRD+SIK+N KE+RL           +++ IVVE+F  K  RPKTKE   A+ RWG+ P  K   +V +  + +  S+RNI T+K++   +LN+FD+L+A+ +V T   +  +   YG
Sbjct:   13 EVGETALELRVAKAENAAHIVHRALRRQMANARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSIKMNYKERRL--ALRTALISRSDSLIVVEDFSDKLPRPKTKELAAAIARWGVQPNDKVLLIVADKQDTIYLSARNIATVKLIQATSLNVFDLLNADWIVATVEALGKIQEVYG 209          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_NOSP7 (50S ribosomal protein L4 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplD PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 8.617e-47
Identity = 95/200 (47.50%), Postives = 136/200 (68.00%), Query Frame = -2
Query:  316 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEV--SENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 909
            ++GET  +L+ A  +TA  +VHRAL+  + N R+G AST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+ +K+N+KE+RL            ++ IVVEEF  +  RPKTK+ + A+ RWG+ P+ KA  ++ E+  ++NV  S+RNI  LK++    LN+FD+L A+ +V+T S ++ +   Y
Sbjct:   13 QVGETTFELRVAKEETASHIVHRALVRQLTNARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKLNRKERRL--ALRTAFVGRIDDLIVVEEFSTELSRPKTKDLVAALARWGVVPESKALLILSEIADTDNVYLSARNIENLKLIAANQLNVFDLLHADKIVVTASALEKIQEVY 210          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_TRIEI (50S ribosomal protein L4 OS=Trichodesmium erythraeum (strain IMS101) GN=rplD PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 9.528e-46
Identity = 94/199 (47.24%), Postives = 133/199 (66.83%), Query Frame = -2
Query:  313 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRYG 909
            ++G+  L+L+ A  ++A  +VHR+L   M N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+S K+N+KEKRL           +E+ IV+E+   +F +PKTKE ++A+ RWG+D + K   ++ E  ENV  S RNI  LK++    LN++DIL A+ ++ T + +  +   YG
Sbjct:   13 EVGQATLNLRVAKEESAAHIVHRSLRLQMANNRQGTASTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSHKMNRKEKRL--ALSTAFQSRSEDLIVIEDLSEQFTKPKTKELVQAITRWGIDIQAKIVLVLPEKQENVYLSGRNIAKLKIILANNLNIYDILAADKIIATVTAIAKIQEVYG 209          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_ANASP (50S ribosomal protein L4 OS=Anabaena sp. (strain PCC 7120) GN=rplD PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 9.528e-46
Identity = 93/198 (46.97%), Postives = 130/198 (65.66%), Query Frame = -2
Query:  316 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 909
            +IG+   +L+ A   TA  +VHRAL+    N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+ +K+N+KE+RL            ++ I+VEEF  +  RPKTK+ + A  RWG +P+ K   ++ E  ENV  S+RNI  LK++    LN++D+L A+ +V+T S ++ +   Y
Sbjct:   13 QIGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRL--ALRTAFVSRIDDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLIAADQLNVYDLLHADKIVVTTSALEKIQEVY 208          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_CYAP7 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7424) GN=rplD PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.244e-45
Identity = 93/187 (49.73%), Postives = 128/187 (68.45%), Query Frame = -2
Query:  349 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLT 909
            ++G+T L+LK A  +TA  ++HRA++  + N R+G AST TR EVRGGGRKP+ QK TGRAR GSNR+PL  GGGV+FGPKPRD+S K+N+KE+RL           AEN I+VE F  +  +PKTKE   A+ RWG+  K K   ++ E+ EN+  S+RNI  +K++   ++N++DIL A  LV T
Sbjct:   13 EVGQTSLELKVAKEETASHILHRAVVRHLANARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTALNSKAENLIIVENFAPELPQPKTKELALALTRWGVTEKDKVLLILSEIPENISLSARNICNVKLIRADSINVYDILSASKLVAT 197          
BLAST of CV886819 vs. ExPASy Swiss-Prot
Match: RL4_ANAVT (50S ribosomal protein L4 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplD PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.244e-45
Identity = 92/198 (46.46%), Postives = 130/198 (65.66%), Query Frame = -2
Query:  316 KIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXAENTIVVEEFDGKFERPKTKEFIEAMRRWGLDPKQKATFLVMEVSENVEKSSRNIGTLKMLTPRTLNLFDILDAETLVLTPSTVDFLNGRY 909
            ++G+   +L+ A   TA  +VHRAL+    N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+ +K+N+KE+RL            ++ I+VEEF  +  RPKTK+ + A  RWG +P+ K   ++ E  ENV  S+RNI  LK++    LN++D+L A+ +V+T S ++ +   Y
Sbjct:   13 QVGQKTFELRVAKETTAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKMNRKERRL--ALRTALVSRIDDLILVEEFSNELSRPKTKDLVAAFTRWGAEPESKILLILSEFPENVYLSARNIENLKLIAADQLNVYDLLHADKIVVTTSALEKIQEVY 208          
The following BLAST results are available for this feature:
BLAST of CV886819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK4_ARATH1.407e-8174.6350S ribosomal protein L4, chloroplastic OS=Arabido... [more]
RK4_TOBAC4.527e-8075.8850S ribosomal protein L4, chloroplastic OS=Nicotia... [more]
RK4_SPIOL4.848e-7468.0050S ribosomal protein L4, chloroplastic OS=Spinaci... [more]
RL4_THEEB4.133e-4950.2550S ribosomal protein L4 OS=Thermosynechococcus el... [more]
RL4_CYAP45.968e-4849.2550S ribosomal protein L4 OS=Cyanothece sp. (strain... [more]
RL4_NOSP78.617e-4747.5050S ribosomal protein L4 OS=Nostoc punctiforme (st... [more]
RL4_TRIEI9.528e-4647.2450S ribosomal protein L4 OS=Trichodesmium erythrae... [more]
RL4_ANASP9.528e-4646.9750S ribosomal protein L4 OS=Anabaena sp. (strain P... [more]
RL4_CYAP71.244e-4549.7350S ribosomal protein L4 OS=Cyanothece sp. (strain... [more]
RL4_ANAVT1.244e-4546.4650S ribosomal protein L4 OS=Anabaena variabilis (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_025D09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T3_D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886819 ID=CV886819; Name=CV886819; organism=Citrus sinensis; type=EST; length=910bp
CGTACATCTGCATATATTTTTAACATAGAGGAGCAAGTTCAAGAATACAA
AAAAGATTGACATACTAATATACCAAAAACTAGGCTTGATCGAGCTACAG
CCTGCAACATTACACAATTGTTGGCTTAGGCATTTTAAAGAAAAAAAAAA
TCTTTATAATCAAGTGTGTCGCAATAAAATGGATCCTAGGTCAATCAAGG
CGAAAACTTGCCACAAGACTCTGAATCATTATTCTGCTGCATCACTTTCC
TCCCCTGCCTCCCTCGCTTCACTCTCTTCTTCTTCTTCATCGCCATCTCC
CTCGAACTCGACCCCATACCTGCCATTCAGGAAATCAACAGTTGACGGCG
TCAACACCAGCGTCTCCGCATCCAAAATATCAAACAAATTCAATGTCCTC
GGCGTTAACATCTTCAAAGTCCCAATATTCCTACTCGATTTCTCCACATT
CTCGCTCACCTCCATCACCAAGAACGTCGCTTTCTGCTTCGGGTCCAAAC
CCCACCTCCTCATCGCCTCAATAAACTCCTTCGTCTTCGGCCTCTCAAAC
TTCCCATCAAATTCCTCCACCACAATCGTGTTCTCCGCCGCCGCGGCGCT
CGCTATCGCCGTCGAAATCGCCAGCCGCTTCTCCTTCTTGTTTATCTTAA
TCGACCAGTCCCTCGGCTTGGGTCCAAAAACGACGCCTCCTCCGGGCCGA
AGTGGGGTCCTGTTCGATCCGCGACGAGCCCTACCCGTTTTCTTTTGAGA
GTAGGGTTTCCGTCCCCCACCTCTTACCTCCCCGCGCGTGAGAGTCGACG
CGGTGCCGCGTCGCTTGTTCTGCATGTCGGTGATCAACGCCCGGTGGACA
ACCGCACGCGCTGTGTCGGGTGCGGCCGACTTTAGGTCGAGGTATGTCTC
GCCGATTTTT
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