EY665621

Overview
NameEY665621
Unique NameEY665621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:444..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.852e-42
Identity = 83/109 (76.15%), Postives = 87/109 (79.82%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYK 369
            DPFITTD +TYMFKYDSVHG WKHHELK KD KTLLFGEKPVTVFGVRNP EIPW ETGAE+VV+STGVFT               VIISAPSKDAPMF VGVNE+EYK
Sbjct:   37 DPFITTDYMTYMFKYDSVHGQWKHHELKVKDSKTLLFGEKPVTVFGVRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYK 145          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 7.025e-41
Identity = 80/109 (73.39%), Postives = 86/109 (78.90%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYK 369
            DPFITTD +TYMFKYDSVHG WKHHELK KD KTLLFGE+PVTVFG RNP EIPW +TGA+YVV+STGVFT               VIISAPSKDAPMF VGVNE+EYK
Sbjct:   35 DPFITTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGERPVTVFGNRNPEEIPWGQTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYK 143          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.044e-40
Identity = 79/109 (72.48%), Postives = 85/109 (77.98%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYK 369
            DPFI+ + +TYMFKYDSVHG WKHHELKAKD KTLLFGEKPVTVFG+RNP EIPW E GA+YVV+STGVFT               VIISAPSKDAPMF VGVNE EYK
Sbjct:   35 DPFISVEYMTYMFKYDSVHGQWKHHELKAKDDKTLLFGEKPVTVFGIRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYK 143          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 2.669e-40
Identity = 78/109 (71.56%), Postives = 87/109 (79.82%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYK 369
            DPFITT+ +TYMFKYDSVHG WKH+ELK KD KTLLFGEKPVTVFG+RNP +IPWAE GA+YVV+STGVFT               V+ISAPSKDAPMF VGVNE+EYK
Sbjct:   37 DPFITTEYMTYMFKYDSVHGQWKHNELKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYK 145          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.486e-40
Identity = 78/110 (70.91%), Postives = 85/110 (77.27%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYKP 372
            DPFI+TD +TYMFKYDSVHG WKHHELK KD KTLLFGEK V VFG+RNP EIPWAE GA++VV+STGVFT               V+ISAPSKDAPMF VGVNE EYKP
Sbjct:   24 DPFISTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGEKSVRVFGIRNPEEIPWAEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKP 133          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.767e-40
Identity = 78/109 (71.56%), Postives = 83/109 (76.15%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYK 369
            DPFITTD +TYMFKYD+VHG WKHHELK KD KTLLFGEKPVTVFG RNP EIPW ETGAE+VV+STGVFT               V+ISAPS DAPMF VGVN  EYK
Sbjct:   36 DPFITTDYMTYMFKYDTVHGQWKHHELKVKDEKTLLFGEKPVTVFGCRNPEEIPWGETGAEFVVESTGVFTTKEKASAHLKGGAKKVVISAPSADAPMFVVGVNHTEYK 144          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.325e-39
Identity = 78/110 (70.91%), Postives = 85/110 (77.27%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYKP 372
            DPFITT+ +TYMFKYDSVHG WKHH++K KD KTLLFGEK VTVFG RNP EIPW  TGA+YVV+STGVFT               VIISAPSKDAPMF VGVNE+EYKP
Sbjct:   35 DPFITTEYMTYMFKYDSVHGQWKHHDIKVKDEKTLLFGEKAVTVFGNRNPEEIPWGGTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKP 144          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 1.730e-39
Identity = 76/109 (69.72%), Postives = 86/109 (78.90%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYK 369
            DPFITT+ +TYMFKYDSVHG WKH+ELK KD KTLLFGEKPVTVFG+RNP +IPW E GA++VV+STGVFT               V+ISAPSKDAPMF VGVNE+EYK
Sbjct:   37 DPFITTEYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYK 145          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.034e-39
Identity = 79/109 (72.48%), Postives = 83/109 (76.15%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYK 369
            DPFI+TD +TYMFKYDSVHG WKHHELK KD KTLLFGEKPV VFG RNP EIP A TGAEY+V+STGVFT               VIISAPSKDAPMF VGVNE EYK
Sbjct:   35 DPFISTDYMTYMFKYDSVHGAWKHHELKVKDEKTLLFGEKPVVVFGRRNPEEIPRASTGAEYIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYK 143          
BLAST of EY665621 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.121e-38
Identity = 76/110 (69.09%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   43 DPFITTDLLTYMFKYDSVHGLWKHHELKAKDYKTLLFGEKPVTVFGVRNP*EIPWAETGAEYVVDSTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFGVGVNENEYKP 372
            DPFI+TD +TYMFKYDSVHG WK HE+K KD  TLLFGEK VTVFG RNP EIPW ETG EYVV+STGVFT               V+I+APSKDAPMF VGVNE+EYKP
Sbjct:   38 DPFISTDYMTYMFKYDSVHGQWKKHEVKVKDSNTLLFGEKAVTVFGCRNPEEIPWGETGVEYVVESTGVFTDKEKAAAHIKGGAKKVVITAPSKDAPMFVVGVNEHEYKP 147          
The following BLAST results are available for this feature:
BLAST of EY665621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
G3PC_MAGLI2.852e-4276.15Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU7.025e-4173.39Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_PETHY2.044e-4072.48Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH2.669e-4071.56Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC3.486e-4070.91Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_RANAC7.767e-4071.56Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA1.325e-3970.91Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL1.730e-3969.72Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ANTMA5.034e-3972.48Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI1.121e-3869.09Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-070-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665621 ID=EY665621; Name=EY665621; organism=Citrus sinensis; type=EST; length=378bp
TGCACGCAGTACGGTCCGGATTCCGGGTCGACCCCGCGTCCGGATCCCTT
TATCACAACCGACTTATTGACATACATGTTTAAGTACGACAGTGTTCACG
GTCTATGGAAGCACCATGAATTGAAGGCTAAGGACTATAAGACCCTTCTC
TTTGGTGAGAAGCCTGTCACTGTTTTCGGTGTTAGGAACCCATAGGAGAT
CCCATGGGCTGAGACTGGAGCCGAGTATGTTGTGGATTCCACTGGAGTCT
TTACTGACAAGGATAAGGCTGCTGCCCATTTGAAGGGTGGTGCTAAAAAA
GTTATCATCTCAGCCCCCAGCAAGGATGCTCCTATGTTTGGTGTCGGTGT
CAATGAAAACGAGTACAAACCATAGCTC
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