CV886806
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV886806 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1) HSP 1 Score: 345.895 bits (886), Expect = 1.261e-94 Identity = 165/177 (93.22%), Postives = 171/177 (96.61%), Query Frame = 1 Query: 1 VTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 531 VTFRFHQYQVVGR LP+E DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR PCIQII+TATIPAKLCKRES+KQFHNSKIKFPLV +K+RPP+RKLKT YKASRPNLFM Sbjct: 2 VTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178
BLAST of CV886806 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2) HSP 1 Score: 344.354 bits (882), Expect = 3.669e-94 Identity = 163/175 (93.14%), Postives = 171/175 (97.71%), Query Frame = 1 Query: 7 FRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 531 FRFHQYQVVGRALPTEKD PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQII+TAT+PAKLCKRESTKQFHNSKIKFPLVF+KVRPP+RKLKTTYKA++PNLFM Sbjct: 4 FRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178
BLAST of CV886806 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1) HSP 1 Score: 340.502 bits (872), Expect = 5.298e-93 Identity = 161/175 (92.00%), Postives = 167/175 (95.43%), Query Frame = 1 Query: 7 FRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 531 FRFHQYQVVGRALPTE DEHPKIYRMKLW NEV AKSKFWYF+RKLKKVKKSNGQMLAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR PCIQII+TAT+PAKLCKRE TKQFHNSKIKFPLVF+KVRPP+RKLKTTYKAS+PNLFM Sbjct: 4 FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178
BLAST of CV886806 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1) HSP 1 Score: 333.569 bits (854), Expect = 6.477e-91 Identity = 158/175 (90.29%), Postives = 166/175 (94.86%), Query Frame = 1 Query: 7 FRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 531 FRFHQYQVVGR LPT DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR PCIQII+TAT+ KLCKR++TKQFH S IKFPLV++KVRPPTRKLKTT+KASRPNLFM Sbjct: 4 FRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178
BLAST of CV886806 vs. ExPASy Swiss-Prot
Match: RL18A_DICDI (60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2) HSP 1 Score: 199.519 bits (506), Expect = 1.460e-50 Identity = 96/171 (56.14%), Postives = 124/171 (72.51%), Query Frame = 1 Query: 16 HQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 528 H++QVVGR +PTE+D +PKIYRM+L+A + AKS+FWYFL K+ K+KKS G++L + EIFE P K+KN+G+++RY SR+G HN+YKEYRD T GAV QMY EMASRH R I II I A L +R +TKQFH+SKIKFPL + K K+T+ A+RPN F Sbjct: 4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHIIDIKEIAASLTRRANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRPNTF 169
BLAST of CV886806 vs. ExPASy Swiss-Prot
Match: RL18A_HUMAN (60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2) HSP 1 Score: 191.045 bits (484), Expect = 5.192e-48 Identity = 89/170 (52.35%), Postives = 123/170 (72.35%), Query Frame = 1 Query: 19 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 528 +Y+VVGR LPT K P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++ ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI++ I A C+R + KQFH+SKIKFPL + +R R+ K + RPN F Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
BLAST of CV886806 vs. ExPASy Swiss-Prot
Match: RL18A_BOVIN (60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 5.192e-48 Identity = 89/170 (52.35%), Postives = 123/170 (72.35%), Query Frame = 1 Query: 19 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 528 +Y+VVGR LPT K P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++ ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI++ I A C+R + KQFH+SKIKFPL + +R R+ K + RPN F Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
BLAST of CV886806 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 8.856e-48 Identity = 89/170 (52.35%), Postives = 123/170 (72.35%), Query Frame = 1 Query: 19 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 528 +Y+VVGR LPT K P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++ ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI++ I A C+R + KQFH+SKIKFPL + +R R+ K + RPN F Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
BLAST of CV886806 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 8.856e-48 Identity = 89/170 (52.35%), Postives = 123/170 (72.35%), Query Frame = 1 Query: 19 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 528 +Y+VVGR LPT K P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++ ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI++ I A C+R + KQFH+SKIKFPL + +R R+ K + RPN F Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
BLAST of CV886806 vs. ExPASy Swiss-Prot
Match: RL18A_DANRE (60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 3.365e-47 Identity = 87/170 (51.18%), Postives = 124/170 (72.94%), Query Frame = 1 Query: 19 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 528 +Y+VVGR LP+ K+ P +YRM+++A N V AKS+FWYF+ +L+K+KK++G+++ +FEK+P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+ IQI++ I A C+R + KQFH+SKIKFPL + +R R+ K + RPN F Sbjct: 9 EYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175 The following BLAST results are available for this feature:
BLAST of CV886806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CV886806 ID=CV886806; Name=CV886806; organism=Citrus sinensis; type=EST; length=709bpback to top |