CV886788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV886788 vs. ExPASy Swiss-Prot
Match: RM02_ARATH (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 1.043e-60 Identity = 142/238 (59.66%), Postives = 161/238 (67.65%), Query Frame = -1 Query: 274 VDQRKVASFSPGLMAADVNAMVSIPSSKSPFTTTSD---SKGAGGKSKITCAKDVFFSAFSSPMASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR-SLPAKP----------------KDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTGNLLPS*QN 900 VD+RKVA FSPGLMAA V +V +P+ P +++ SKGAG S T KDVFFSAFSSP A ETASL++ PR+AVAGAKP FFAPRM +KV RGK+T SLCE+QK R S WAHRIK KA LSWQ FRRQDTLG+VGAA H KSKPKTD+ +LPAKP KDGAC+V PVTYIIASHQLEAGKMV+N D SKPST + L S QN Sbjct: 116 VDKRKVACFSPGLMAAYV--VVGLPTGMPPLSSSKSAFASKGAG--STKTLVKDVFFSAFSSPKAKRETASLAFASSFGFPRIAVAGAKPAFFAPRMRQKV---------RGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGLVGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPVTYIIASHQLEAGKMVMNCDWSKPSTSSFLQSAQN 340
BLAST of CV886788 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2) HSP 1 Score: 171.014 bits (432), Expect = 4.176e-44 Identity = 114/241 (47.30%), Postives = 131/241 (54.36%), Query Frame = -1 Query: 205 FSAFSSPMASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTGNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 741 FS+ SSP+A GETASLS+ PR+AVAGAKP FFA RM EK + GK T SLCEI+KWR WAHRIK KAALSWQ R+Q TL +VGAAEHN+SK K D+ SLPAK PKDGA +V PVTYI+ASHQLEAG MV+N D SKPS L QNA+ + F + T GRV+G A SWP Sbjct: 113 FSSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344 HSP 2 Score: 28.4906 bits (62), Expect = 4.176e-44 Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -2 Query: 138 SYRYETLGLNSIIGNCIPL 194 +YR+E L LNS +GN IPL Sbjct: 348 AYRHEILDLNSKVGNSIPL 366
BLAST of CV886788 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2) HSP 1 Score: 171.014 bits (432), Expect = 4.176e-44 Identity = 114/241 (47.30%), Postives = 131/241 (54.36%), Query Frame = -1 Query: 205 FSAFSSPMASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTGNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 741 FS+ SSP+A GETASLS+ PR+AVAGAKP FFA RM EK + GK T SLCEI+KWR WAHRIK KAALSWQ R+Q TL +VGAAEHN+SK K D+ SLPAK PKDGA +V PVTYI+ASHQLEAG MV+N D SKPS L QNA+ + F + T GRV+G A SWP Sbjct: 113 FSSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344 HSP 2 Score: 28.4906 bits (62), Expect = 4.176e-44 Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -2 Query: 138 SYRYETLGLNSIIGNCIPL 194 +YR+E L LNS +GN IPL Sbjct: 348 AYRHEILDLNSKVGNSIPL 366
BLAST of CV886788 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1) HSP 1 Score: 171.014 bits (432), Expect = 4.176e-44 Identity = 114/241 (47.30%), Postives = 131/241 (54.36%), Query Frame = -1 Query: 205 FSAFSSPMASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTGNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 741 FS+ SSP+A GETASLS+ PR+AVAGAKP FFA RM EK + GK T SLCEI+KWR WAHRIK KAALSWQ R+Q TL +VGAAEHN+SK K D+ SLPAK PKDGA +V PVTYI+ASHQLEAG MV+N D SKPS L QNA+ + F + T GRV+G A SWP Sbjct: 113 FSSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344 HSP 2 Score: 28.4906 bits (62), Expect = 4.176e-44 Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -2 Query: 138 SYRYETLGLNSIIGNCIPL 194 +YR+E L LNS +GN IPL Sbjct: 348 AYRHEILDLNSKVGNSIPL 366
BLAST of CV886788 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11 Identity = 58/152 (38.16%), Postives = 77/152 (50.66%), Query Frame = -1 Query: 301 LSYPRMAVAGAKPTFFAPRMV--EKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSW-QGFRRQDTLGIVGAAEHNKSKPKTD------------RSLPAKPKDGACRV-----PVTYIIASHQLEAGKMVVNYDGSKPST 696 L P +AVAGAKP FFA RM + G + RG+NT S E Q+W+ S A R K LSW QG + ++ L ++ A + K + + R+L A G+ RV P TYI+AS LE G V+N+ GSKPST Sbjct: 160 LGLPSIAVAGAKPAFFAFRMKGPSSLTGRERLSPLRGENTFSQSEGQRWKTQSG--APRRK-SLVLSWSQGPKARNGL-MISAHDIGKKDRRPEMAGPHTIPEHAPRALHAVGPSGSGRVLRTSEPFTYILASENLEVGNTVMNFHGSKPST 307 HSP 2 Score: 20.4014 bits (41), Expect = 1.014e-11 Identity = 8/30 (26.67%), Postives = 13/30 (43.33%), Query Frame = -2 Query: 138 WMGHSAGLTAFSYRYETLGLNSIIGNCIPL 227 W+ + +Y ++GNCIPL Sbjct: 336 WLHPRGDYASSENKYILDSYYQMVGNCIPL 365 The following BLAST results are available for this feature:
BLAST of CV886788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV886788 ID=CV886788; Name=CV886788; organism=Citrus sinensis; type=EST; length=906bpback to top |