CV886788

Overview
NameCV886788
Unique NameCV886788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV886788 vs. ExPASy Swiss-Prot
Match: RM02_ARATH (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 1.043e-60
Identity = 142/238 (59.66%), Postives = 161/238 (67.65%), Query Frame = -1
Query:  274 VDQRKVASFSPGLMAADVNAMVSIPSSKSPFTTTSD---SKGAGGKSKITCAKDVFFSAFSSPMASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR-SLPAKP----------------KDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTGNLLPS*QN 900
            VD+RKVA FSPGLMAA V  +V +P+   P +++     SKGAG  S  T  KDVFFSAFSSP A  ETASL++      PR+AVAGAKP FFAPRM +KV         RGK+T SLCE+QK R  S  WAHRIK KA LSWQ FRRQDTLG+VGAA H KSKPKTD+ +LPAKP                KDGAC+V   PVTYIIASHQLEAGKMV+N D SKPST + L S QN
Sbjct:  116 VDKRKVACFSPGLMAAYV--VVGLPTGMPPLSSSKSAFASKGAG--STKTLVKDVFFSAFSSPKAKRETASLAFASSFGFPRIAVAGAKPAFFAPRMRQKV---------RGKSTFSLCEVQKGRTHSILWAHRIKGKAGLSWQSFRRQDTLGLVGAAGHKKSKPKTDQGNLPAKPIGERAKQLKALRGLRAKDGACKVDRAPVTYIIASHQLEAGKMVMNCDWSKPSTSSFLQSAQN 340          
BLAST of CV886788 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 4.176e-44
Identity = 114/241 (47.30%), Postives = 131/241 (54.36%), Query Frame = -1
Query:  205 FSAFSSPMASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTGNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 741
            FS+ SSP+A GETASLS+      PR+AVAGAKP FFA RM EK         + GK T SLCEI+KWR     WAHRIK KAALSWQ  R+Q TL +VGAAEHN+SK K D+                                        SLPAK      PKDGA +V   PVTYI+ASHQLEAG MV+N D SKPS    L   QNA+ +  F +   T   GRV+G    A SWP
Sbjct:  113 FSSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344          

HSP 2 Score: 28.4906 bits (62), Expect = 4.176e-44
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -2
Query:  138 SYRYETLGLNSIIGNCIPL 194
            +YR+E L LNS +GN IPL
Sbjct:  348 AYRHEILDLNSKVGNSIPL 366          
BLAST of CV886788 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 4.176e-44
Identity = 114/241 (47.30%), Postives = 131/241 (54.36%), Query Frame = -1
Query:  205 FSAFSSPMASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTGNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 741
            FS+ SSP+A GETASLS+      PR+AVAGAKP FFA RM EK         + GK T SLCEI+KWR     WAHRIK KAALSWQ  R+Q TL +VGAAEHN+SK K D+                                        SLPAK      PKDGA +V   PVTYI+ASHQLEAG MV+N D SKPS    L   QNA+ +  F +   T   GRV+G    A SWP
Sbjct:  113 FSSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344          

HSP 2 Score: 28.4906 bits (62), Expect = 4.176e-44
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -2
Query:  138 SYRYETLGLNSIIGNCIPL 194
            +YR+E L LNS +GN IPL
Sbjct:  348 AYRHEILDLNSKVGNSIPL 366          
BLAST of CV886788 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.176e-44
Identity = 114/241 (47.30%), Postives = 131/241 (54.36%), Query Frame = -1
Query:  205 FSAFSSPMASGETASLSY------PRMAVAGAKPTFFAPRMVEKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSWQGFRRQDTLGIVGAAEHNKSKPKTDR----------------------------------------SLPAK------PKDGACRV---PVTYIIASHQLEAGKMVVNYDGSKPSTGNLLPS*QNAYLH*DFIQ---TAKNGRVDG----AFSWP 741
            FS+ SSP+A GETASLS+      PR+AVAGAKP FFA RM EK         + GK T SLCEI+KWR     WAHRIK KAALSWQ  R+Q TL +VGAAEHN+SK K D+                                        SLPAK      PKDGA +V   PVTYI+ASHQLEAG MV+N D SKPS    L   QNA+ +  F +   T   GRV+G    A SWP
Sbjct:  113 FSSLSSPLAQGETASLSFGSSLGFPRIAVAGAKPAFFAERMREK---------KIGKKTFSLCEIRKWRTHCVLWAHRIKRKAALSWQSLRQQKTLELVGAAEHNESKLKADQGSLLPRQVLAYALCSGRPSYLHASRSFYKALLPVEASRFGSLPAKPPIGEGPKDGAYKVDRAPVTYILASHQLEAGNMVINCDCSKPSKSGFLRPAQNAHTYLRFQELGRTVNKGRVEGGSQLAASWP 344          

HSP 2 Score: 28.4906 bits (62), Expect = 4.176e-44
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = -2
Query:  138 SYRYETLGLNSIIGNCIPL 194
            +YR+E L LNS +GN IPL
Sbjct:  348 AYRHEILDLNSKVGNSIPL 366          
BLAST of CV886788 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 58/152 (38.16%), Postives = 77/152 (50.66%), Query Frame = -1
Query:  301 LSYPRMAVAGAKPTFFAPRMV--EKVGGSDSSPDQRGKNTLSLCEIQKWRADSSFWAHRIKPKAALSW-QGFRRQDTLGIVGAAEHNKSKPKTD------------RSLPAKPKDGACRV-----PVTYIIASHQLEAGKMVVNYDGSKPST 696
            L  P +AVAGAKP FFA RM     + G +     RG+NT S  E Q+W+  S   A R K    LSW QG + ++ L ++ A +  K   + +            R+L A    G+ RV     P TYI+AS  LE G  V+N+ GSKPST
Sbjct:  160 LGLPSIAVAGAKPAFFAFRMKGPSSLTGRERLSPLRGENTFSQSEGQRWKTQSG--APRRK-SLVLSWSQGPKARNGL-MISAHDIGKKDRRPEMAGPHTIPEHAPRALHAVGPSGSGRVLRTSEPFTYILASENLEVGNTVMNFHGSKPST 307          

HSP 2 Score: 20.4014 bits (41), Expect = 1.014e-11
Identity = 8/30 (26.67%), Postives = 13/30 (43.33%), Query Frame = -2
Query:  138 WMGHSAGLTAFSYRYETLGLNSIIGNCIPL 227
            W+       +   +Y       ++GNCIPL
Sbjct:  336 WLHPRGDYASSENKYILDSYYQMVGNCIPL 365          
The following BLAST results are available for this feature:
BLAST of CV886788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RM02_ARATH1.043e-6059.6660S ribosomal protein L2, mitochondrial OS=Arabido... [more]
RM02_ORYSJ4.176e-4447.3060S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSI4.176e-4447.3060S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSA4.176e-4447.3060S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_MARPO1.014e-1138.1660S ribosomal protein L2, mitochondrial OS=Marchan... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_025C02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_025_T3_C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886788 ID=CV886788; Name=CV886788; organism=Citrus sinensis; type=EST; length=906bp
GTACATTAAGAAATTTGAAAGAAAGAATAGAAGGGATACTGATAGAAGAA
TAAGTATTCCTTTTCTTTCCGTCTTATCAGAGGGAAGGGGTCCTCTTCAT
TGAAAAAGGGGAAAGGAGTTACGCAAATGTGAGGGTCTAATGGTATGCAG
TTTCCAATTATAGAATTTAGACCAAGTGTCTCATACCTATAACTAAAAGC
AGTCAGGCCAGCTGAATGCCCCATCCACTCGGCCGTTCTTTGCTGTCTGA
ATAAAGTCTTAGTGTAGATAGGCATTCTGTCAAGATGGCAATAAGTTACC
GGTTGAAGGTTTGGACCCATCATAATTCACCACCATTTTGCCTGCTTCCA
ATTGATGACTGGCTATTATATAAGTGACAGGTACTCTGCATGCTCCATCC
TTGGGCTTGGCAGGCAAGCTGCGATCTGTCTTTGGCTTTGATTTGTTATG
CTCAGCAGCTCCAACAATCCCTAAAGTATCTTGCCGCCTAAAACCCTGCC
AAGAAAGTGCTGCCTTAGGTTTGATCCGATGTGCCCAGAAACTGCTATCT
GCTCTCCACTTTTGGATCTCACAAAGGGATAATGTGTTTTTCCCTCTTTG
GTCAGGTGAGCTATCACTTCCTCCGACTTTCTCTACCATTCGAGGGGCGA
AGAAAGTGGGCTTCGCTCCAGCTACTGCCATCCTAGGGTAGGAAAGGGAG
GCAGTCTCTCCACTGGCCATTGGAGATGAGAATGCAGAAAAGAAGACATC
CTTTGCGCAAGTTATTTTACTTTTTCCTCCTGCACCCTTGCTATCACTAG
TAGTCGTAAAGGGGCTCTTCGAACTAGGAATGCTAACCATGGCATTTACA
TCAGCCGCCATCAGTCCAGGTGAGAAGGAAGCTACCTTTCTTTGATCCAC
ATTCTG
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